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AT4G00440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3741)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1239 Blast hits to 1045 proteins in 162 species: Archae - 0; Bacteria - 74; Metazoa - 262; Fungi - 79; Plants - 239; Viruses - 0; Other Eukaryotes - 585 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK23eggNOG:ENOG410YE0MEMBL:AK227177EMBL:BT008655
EMBL:CP002687EnsemblPlants:AT4G00440EnsemblPlants:AT4G00440.1entrez:827901
ExpressionAtlas:Q7Y207GeneID:827901Gramene:AT4G00440.1hmmpanther:PTHR21726
hmmpanther:PTHR21726:SF30HOGENOM:HOG000015118InterPro:IPR022212InterPro:IPR025486
Pfam:PF12552Pfam:PF14309PhylomeDB:Q7Y207Proteomes:UP000006548
RefSeq:NP_191954.3TAIR:AT4G00440UniGene:At.34556UniProt:Q7Y207
Coordinates (TAIR10) chr4:+:195176..198119
Molecular Weight (calculated) 94550.20 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.74
Length 831 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKTQRRAA ARQEREQLGC MWGFMNMFSF RHGPLAHKLL LDQKHASGNP KNNELNKSKF REKDAQETHV GEERNITITI IKPSVKKLIA EELSIDKEIK
101: KQRENAEAGQ LSDSELEGRR RKNQRRKNKT RKKSCDNFSH MNLVDSEEPL VQRRNRRSAR SVDIDNMIEE FYSEIHRRST SHAKNDEDYK EKLRELVKFL
201: ISQKLLHGNR PRGNSEILTS KDLMEVFQIL GSDEELFLKL LQDPEILVPR EKGAESLSLV ESEQSSLADK KWSSFFRRKD EPQEECEASD RIFILKPRSA
301: SFSSPDIGNS RGSSPDSHLM GNKLQNERNS SHYFLSEIKR KLKHAIKKEQ PAGGFGEGFP KTKDHFFLER MAKPSTSQKK SHSEDDKKQR VSNIYTEAKK
401: HLSEMLNNGD LDSKSTSRQV QRSLGRILSF PEYLSPLNSP GRRWEKSSTA HKKSASADFI NLVNIKKETH ASQPEENTDI QVCNLSKEPD DSIQPIASEP
501: NEKSVDIEDE TANEDNMFSA GSADDVMIPN ELDEVPEEAS STLIGDLSKV EAQDEQRDSI NSKQTSLEES QPPLSSSVAS PSHCLAQTEE CKSAITDFPE
601: WSSPISVLEP LFVEDDISPA KMRSQSGEAE VQPWCIHFDE KDPAPTYREN SVTSDKELVF KYVKAVLDAV DSDIEELYLK AQFSDQLLEP ALISNIPFCP
701: NQLCPDHELL FDCINEALME LCCCPPWASF VTPRTRVFST VKSIIHEVQE AVYWHLLPLP LPHALDQIVR KDMARAGNWL DIRCDIDCIG FETSELILNE
801: LLEELILNNT EHSLVSPELK TDGSILILER S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)