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AT4G27070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tryptophan synthase beta-subunit 2
Curator
Summary (TAIR10)
Tryptophan synthase beta. Expressed at low levels in all tissues.
Computational
Description (TAIR10)
tryptophan synthase beta-subunit 2 (TSB2); CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 1 (TAIR:AT5G54810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0133eggNOG:KOG1395EMBL:AK228129EnsemblPlants:AT4G27070
EnsemblPlants:AT4G27070.1entrez:828815ExpressionAtlas:Q0WS13GeneID:828815
GO:GO:0004834Gramene:AT4G27070.1gramene_pathway:4.2.1.20gramene_pathway:TRPSYN-PWY
HAMAP:MF_00133hmmpanther:PTHR10314hmmpanther:PTHR10314:SF98InterPro:IPR001926
InterPro:IPR006653InterPro:IPR006654InterPro:IPR023026KEGG:00260+4.2.1.20
KEGG:00400+4.2.1.20KEGG:ath:AT4G27070KO:K01696OMA:NVYRMRM
PaxDb:Q0WS13Pfam:P25269Pfam:PF00291PhylomeDB:Q0WS13
PIRSF:PIRSF001413PRIDE:Q0WS13PROSITE:PS00168ProteinModelPortal:Q0WS13
RefSeq:NP_194437.1scanprosite:PS00168SMR:Q0WS13STRING:3702.AT4G27070.1
SUPFAM:SSF53686TAIR:AT4G27070tair10-symbols:TSB2TIGRfam:TIGR00263
TIGRFAMs:TIGR00263UniGene:At.327unipathway:UPA00035UniProt:P25269
UniProt:Q0WS13
Coordinates (TAIR10) chr4:+:13586564..13588619
Molecular Weight (calculated) 51603.50 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.23
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)