AT4G27080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PDI-like 5-4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PDI-like 5-4 (PDIL5-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: PDI-like 5-3 (TAIR:AT3G20560.1); Has 8388 Blast hits to 6097 proteins in 1074 species: Archae - 57; Bacteria - 1582; Metazoa - 3258; Fungi - 1123; Plants - 1038; Viruses - 5; Other Eukaryotes - 1325 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13589156..13593335 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53896.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSTSKIKSV DFYRKIPRDL TEASLSGAGL SIIAALSMIF LFGMELNNYL AVSTSTSVIV DRSADGDFLR LDFNISFPSL SCEFASVDVS DVLGTNRLNV 101: TKTIRKFSID SNMRPTGSEF HAGEVLSLIN HGDETGEEIV EDSVPLTGRN FDTFTHQFPI LVVNFYAPWC YWCNLLKPSW EKAAKQIKER YDPEMDGRVI 201: LAKVDCTQEG DLCRRNHIQG YPSIRIFRKG SDLKDDNAHH DHESYYGDRD TESLVKMVVS LVEPIHLEPH NLALEDKSDN SSRTLKKAPS TGGCRVEGYM 301: RVKKVPGNLM VSARSGSHSF DSSQMNMSHV VNHLSFGRRI MPQKFSEFKR LSPYLGLSHD RLDGRSFINQ RDLGPNVTIE HYLQIVKTEV VKSNGQALVE 401: AYEYTAHSSV AHSYYLPVAK FHFELSPMQV LITENSKSFS HFITNVCAII GGVFTVAGIL DSILHHSMTL MKKIELGKNF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)