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AT4G17900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G32700.1); Has 403 Blast hits to 403 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFY5eggNOG:ENOG410YD1CEMBL:AK227244EMBL:BT029385
EMBL:CP002687EnsemblPlants:AT4G17900EnsemblPlants:AT4G17900.1entrez:827514
ExpressionAtlas:Q0WUB8GeneID:827514Gramene:AT4G17900.1hmmpanther:PTHR31065
hmmpanther:PTHR31065:SF2HOGENOM:HOG000235045InterPro:IPR006734OMA:EEENRWP
Pfam:PF04640PhylomeDB:Q0WUB8Proteomes:UP000006548RefSeq:NP_193524.2
STRING:3702.AT4G17900.1TAIR:AT4G17900UniGene:At.2047UniProt:Q0WUB8
Coordinates (TAIR10) chr4:+:9946046..9947697
Molecular Weight (calculated) 25753.90 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.61
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIEDQENTI REIKPKNRRI MGAGGPEEEE NRWPPWLKPL LKEQFFVHCK FHGDSHKSEC NMYCLDCTNG PLCSLCLAHH KDHRTIQIRR SSYHDVIRVN
101: EIQKYLDIGG IQTYVINSAK VVFLNERPQP RPGKGVTNTC KVCYRSLVDD SFRFCSLGCK IAGTSRGFEK GRENLLMETE DSSSSIAIGK NITNLQSFSP
201: STPPLTTSSN CRIVKRRKGI PHRSPMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)