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AT1G17147.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUNJeggNOG:ENOG41106Q9EMBL:AC007651EMBL:CP002684
EMBL:DQ487486EMBL:DQ652639EnsemblPlants:AT1G17147EnsemblPlants:AT1G17147.1
entrez:6240987GeneID:6240987GO:GO:0005634Gramene:AT1G17147.1
hmmpanther:PTHR34777hmmpanther:PTHR34777:SF1InterPro:IPR008889KEGG:ath:AT1G17147
OMA:PPVGELYPaxDb:Q1G3U8Pfam:PF05678Pfam:Q1G3U8
PhylomeDB:Q1G3U8PIR:D86307PRO:PR:Q1G3U8Proteomes:UP000006548
RefSeq:NP_001117300.1STRING:3702.AT1G17147.1TAIR:AT1G17147UniGene:At.69566
UniGene:At.70037UniProt:Q1G3U8
Coordinates (TAIR10) chr1:-:5863654..5863950
Molecular Weight (calculated) 10895.70 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.52
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MSAGVRSEPM KVVFINTQYV QTDARSFKTI VQELTGKNAV VADGPYEFSG QGYGGKDSSQ RFCGVGKEAE RGVETTEFDS FFREMPPVGE LYNLWSDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)