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AT1G78410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G17147.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:844177eggNOG:ENOG410JINPeggNOG:ENOG41115YHEMBL:AC013430
EMBL:AY070754EMBL:AY085552EMBL:AY102135EMBL:AY821790
EMBL:AY821791EMBL:CP002684EnsemblPlants:AT1G78410EnsemblPlants:AT1G78410.1
entrez:844177GeneID:844177Genevisible:Q8VYI5GO:GO:0005634
GO:GO:0006979Gramene:AT1G78410.1hmmpanther:PTHR34777hmmpanther:PTHR34777:SF1
HOGENOM:HOG000090326InterPro:IPR008889KEGG:ath:AT1G78410OMA:IINTQYI
PaxDb:Q8VYI5Pfam:PF05678Pfam:Q8VYI5PhylomeDB:Q8VYI5
PIR:F96812PRIDE:Q8VYI5PRO:PR:Q8VYI5Proteomes:UP000006548
RefSeq:NP_565179.1STRING:3702.AT1G78410.1TAIR:AT1G78410UniGene:At.28332
UniGene:At.74173UniProt:Q8VYI5
Coordinates (TAIR10) chr1:+:29502728..29503054
Molecular Weight (calculated) 11876.00 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.60
Length 108 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGRGKVKSE PMKVVFINTQ YVETDARSFK TVVQELTGKN AIVAAGPFDS PSAFDGRCYD GGSKIGEDTR QLHGGGGGGG RMGTTTEFDR LFKEMPHMEE
101: LYKLWSEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)