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AT4G04450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-b
Computational
Description (TAIR10)
WRKY42; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 31 (TAIR:AT4G22070.1); Has 3599 Blast hits to 3152 proteins in 220 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 2; Plants - 3474; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
BioGrid:11086eggNOG:ENOG410IENHeggNOG:ENOG410YDVMEMBL:AF076243
EMBL:AL161500EMBL:AY052650EMBL:CP002687EnsemblPlants:AT4G04450
EnsemblPlants:AT4G04450.1entrez:825775ExpressionAtlas:Q9XEC3Gene3D:2.20.25.80
GeneID:825775Genevisible:Q9XEC3GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0043565GO:GO:0044212GO:GO:0045892
Gramene:AT4G04450.1hmmpanther:PTHR31429hmmpanther:PTHR31429:SF16InParanoid:Q9XEC3
InterPro:IPR003657iPTMnet:Q9XEC3KEGG:ath:AT4G04450ncoils:Coil
OMA:QATRTHRPaxDb:Q9XEC3Pfam:PF03106Pfam:Q9XEC3
Pfscan:PS50811PhylomeDB:Q9XEC3PIR:C85056PRIDE:Q9XEC3
PRO:PR:Q9XEC3PROSITE:PS50811ProteinModelPortal:Q9XEC3Proteomes:UP000006548
RefSeq:NP_192354.1SMART:SM00774SMR:Q9XEC3STRING:3702.AT4G04450.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT4G04450tair10-symbols:AtWRKY42
tair10-symbols:WRKY42UniGene:At.26287UniProt:Q1PEB9UniProt:Q9XEC3
Coordinates (TAIR10) chr4:+:2218379..2221113
Molecular Weight (calculated) 58074.80 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.76
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)