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AT4G29610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.847
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytidine/deoxycytidylate deaminase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3306 Blast hits to 3284 proteins in 1430 species: Archae - 58; Bacteria - 2532; Metazoa - 138; Fungi - 102; Plants - 130; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29610-MONOMEREC:3.5.4.5eggNOG:COG0295eggNOG:KOG0833
EMBL:AF080676EMBL:AF121877EMBL:AL079344EMBL:AL161575
EMBL:CP002687EnsemblPlants:AT4G29610EnsemblPlants:AT4G29610.1entrez:829082
GeneID:829082Genevisible:Q9SU86GO:GO:0004126GO:GO:0008270
Gramene:AT4G29610.1gramene_pathway:3.5.4.5gramene_pathway:PWY-6556hmmpanther:PTHR11644
hmmpanther:PTHR11644:SF2HOGENOM:HOG000218616InParanoid:Q9SU86InterPro:IPR002125
InterPro:IPR006263InterPro:IPR013171InterPro:IPR016193KEGG:00240+3.5.4.5
KEGG:00983+3.5.4.5KEGG:ath:AT4G29610OMA:NSAMSEIPaxDb:Q9SU86
Pfam:PF00383Pfam:PF08211Pfam:Q9SU86Pfscan:PS51747
PhylomeDB:Q9SU86PIR:T09924PIRSF:PIRSF006334PRIDE:Q9SU86
PRO:PR:Q9SU86PROSITE:PS51747ProteinModelPortal:Q9SU86Proteomes:UP000006548
RefSeq:NP_194690.1SMR:Q9SU86STRING:3702.AT4G29610.1SUPFAM:SSF53927
TAIR:AT4G29610TIGRfam:TIGR01355TIGRFAMs:TIGR01355UniGene:At.54547
UniProt:Q9SU86
Coordinates (TAIR10) chr4:+:14517448..14518329
Molecular Weight (calculated) 32045.60 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.10
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFVYTPSEA AEEGVRGPSD LPKLIDKAMS LARAPVSTFK VGAVGLTSSG EVFLGVNVEF PNLPLHHTIH AEQFLVTNLA LNSMKKLTHI AVSVTGTIFG
101: APCGHCRQFY QEMRNAPEIE ILIKRPKDGI DEFMSLKSLM PERFGPDSIL PEDASLLLEQ RDNSLVLSDP EEICSDPEDC SHTKCRALAA ANKSYAPYSK
201: CPSGVALICG GEVYKGWYIE SVAYNPSLGP VEAALVDFVA RGGGKEFNEI TEVVLVEMKD VKVSQEATAR TFLDKIAPKC DFKVLHCYKT NKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)