AT2G32390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate receptor 3.5 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family | ||||||||||||||||
| Computational Description (TAIR10) |
glutamate receptor 3.5 (GLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3 (InterPro:IPR000337), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2); Has 5516 Blast hits to 5369 proteins in 333 species: Archae - 14; Bacteria - 348; Metazoa - 4290; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13748468..13751757 | ||||||||||||||||
| Molecular Weight (calculated) | 100938.00 Da | ||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||
| Length | 895 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILSLEERPN LRLWRPLKTL MLTRVSSGAP SLILSSRTLI AVDLLAPWEL MENKVVAAIG PQSSGIGHII SHVANELHVP FLSFAATDPT LSSLQYPYFL 101: RTTQNDYFQM NAITDFVSYF RWREVVAIFV DDEYGRNGIS VLGDALAKKR AKISYKAAFP PGADNSSISD LLASVNLMES RIFVVHVNPD SGLNIFSVAK 201: SLGMMGSGYV WITTDWLLTA LDSMEPLDPR ALDLLQGVVA FRHYTPESDN KRQFKGRWKN LRFKESLKSD DGFNSYALYA YDSVWLVARA LDVFFSQGNT 301: VTFSNDPSLR NTNDSGIKLS KLHIFNEGER FLQVILEMNY TGLTGQIEFN SEKNRINPAY DILNIKSTGP LRVGYWSNHT GFSVAPPETL YSKPSNTSAK 401: DQRLNEIIWP GEVIKPPRGW VFPENGKPLK IGVPNRVSYK NYASKDKNPL GVKGFCIDIF EAAIQLLPYP VPRTYILYGD GKKNPSYDNL ISEVAANIFD 501: VAVGDVTIIT NRTKFVDFTQ PFIESGLVVV APVKGAKSSP WSFLKPFTIE MWAVTGALFL FVGAVIWILE HRFNEEFRGP PRRQIITVFW FSFSTMFFSH 601: RENTVSTLGR FVLLVWLFVV LIINSSYTAS LTSILTVQQL TSRIEGMDTL IASNEPIGVQ DGTFAWKFLV NELNIAPSRI IPLKDEEEYL SALQRGPRGG 701: GVAAIVDELP YIKALLSNSN CKFRTVGQEF TRTGWGFAFQ RDSPLAVDMS TAILQLAEEG KLEKIRKKWL TYDHECTMQI SDTENYQISV QSFWGLFLIC 801: GVVWFIALTL FCWKVFWQYQ RLRPEESDEV QARSEEAGSS RGKSLRAVSF KDLIKVVDKR EAEIKEMLKE KSSKKLKDGQ SSAENSQSKD HETPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)