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AT4G01270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01245.1); Has 5689 Blast hits to 5015 proteins in 477 species: Archae - 145; Bacteria - 387; Metazoa - 2946; Fungi - 366; Plants - 512; Viruses - 10; Other Eukaryotes - 1323 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YY6JeggNOG:KOG0827EMBL:AL161491EMBL:CP002687
EnsemblPlants:AT4G01270EnsemblPlants:AT4G01270.1entrez:828038Gene3D:3.30.40.10
GeneID:828038GO:GO:0008270Gramene:AT4G01270.1hmmpanther:PTHR22937
hmmpanther:PTHR22937:SF6HOGENOM:HOG000082550InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT4G01270KO:K11985ncoils:CoilOMA:SQSQGCL
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q9M143PIR:F85016
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_192036.1SMART:SM00184
SMR:Q9M143STRING:3702.AT4G01270.1SUPFAM:SSF57850TAIR:AT4G01270
UniGene:At.54077UniProt:Q9M143
Coordinates (TAIR10) chr4:+:532351..534891
Molecular Weight (calculated) 56522.00 Da
IEP (calculated) 8.23
GRAVY (calculated) -0.72
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEENAAGNA ICSICYEDLK PVVENLQSIS ACGHVFHELC LQQWFEYCPS TNKRNCPICK QKCSLKDPCR LYFQSSGNQT DSIASDKVVG IEEDPVLLRG
101: EVKRLEGKVQ NLTSALEAKK KENVEVSDKL HQCNEQLKED KVKRWEALQE ISTTQHLLKL KSEECIQLNS QCVKLQERTV ALAKELASLK LVSDLSLEED
201: DVLKLALLGN NAKTKDTIDT LVKSLVIRNR SYKELLAKCN QLGRGEARSS EKLEKALEKI EKLKKRMREL ELITEERENR ALRDINVSKK CSYTEVSEPA
301: IESMSSFRML SSDNKVEKIS TPPGKLEEKD GFTIQGSCLR GREDSFVSRT DSVIDVDDDY VPETNTSGIR DWNTNIEEKG DNSMVKDIKF NIRKDPTSSV
401: SPYSNGSGNI WQSSGTNRNL GRWSKHGERN EATPSLGGSV PRKDDLISIG PDGKGGRIKV LRSKPQISKT NASSGSGKRF KLGTKTSGSS SQGCLQIEHY
501: FGKTNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)