AT3G54460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20162050..20167186 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155422.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1378 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MADDHKLCGF LCTVLSVDSP DLLQSGSSCF IFNDGSVTGF KSENGLILSL TNPISNLQSL ISSKGDHDVE NSGTIEDGRL ETPQKRRKCV EGESSGKRKT 0101: PKSKRRVLSG SKEKTVQGRK RVKSIGMVNG SISVVQQLHA LVANKCLKII CRVVKVDKGE NGEERAVVLV DVYLPIELWS GWQFPKSQAT AAALFKHLSC 0201: DWGLRVSILD GKSIWEEANG RIKAIWDLSD CHVFDCKLLC NAPNSPKRRL FKLHEIFKSL PSPGNHDVSY SSRVLPSTDS CVSGVWDLSD DVLISILMKL 0301: DTKDLFSIAA VCRLFRSLTS LIVPCMNLKL FPHQQAAVGW MLERERKAEV SSHPLYLSFD TEDGFSFYVN AVTGDIITEA APMVKDFRGG MFCDEPGLGK 0401: TITALSLILK TQGTMADPPE GLPIVWCTHK SDKKCAYYEY TSDQFTSNSM SAVKRFQSPS SCRNQVSFEA FRPLLESKSL PFKQARLMDP DDQTLESKNS 0501: NFENEFETHI PASLDLKAQC RKSLGNVRKN LLPAYNGASE LSEVMEAKRI SNWKKCGMIT GCKRKGLTDS DVESDIWMQC DSCSKWRRII DEGVSVTGSA 0601: WFCSNNNDPA YQSCNDPEEL WDKSQPIKYL QGFYTKGASG EESDNISFFT SVLREHKSSV SSTVKKALIW LAKLPLEKLS QMETVGLPGP VLGLKLDALG 0701: FQRIFRAFGL KSRVEKGVTK WFYPKFLENL VFDVPALKVA LCQPLDTFRL YLSKATLIVV PTNLVNHWLT QIQKHVCSDQ LRILVWADHI ELSPHSLAWD 0801: YDVVITTFSR LSAEWNPRKK SPLIQVHWLR VMLDEGHTLG SSVSLTNKFQ MAVSLTACNR WLLTGTPTPN TPNSQLSHIQ PLLKFLHEEV YGENPKFWEA 0901: GILRPFEAEM EEGRLRLLQL LQRCMISSRK KDLQMIPPCI KKVTYLNFLP GHARSYNELV ETVRRNILLA DWNDPSHVES LLNSKQWKFR SITISNVRLS 1001: CCVAGHIKMT DAGHDIKETM DALLENDLDL WTEEYSFIQD SLIGGCNCKR CGEWCRLPVI TPCRHLLCLD CVALDSERCT ISGCGYLYEM QTPETLARPE 1101: NPNPKWPVPK DLIELQPSYK QDDWNPDWQS TSSSKVSYLV DRLRKLHEGN KKSILSFNKT DNDNLEDNPP GTSEAFLGKE LHGQDCGSQM VFVDKVLIFS 1201: QFLEHIHVIE QQLTTAGIKF GKMYSPMQSY NKMKALAMFQ NDADCMALLM DGSGALGLDL SFVTHVFLME PIWDKSLEEQ VISRAHRMGA KRPIFVETLT 1301: MRGTIEEQMM RFLEDAEKSD RLLSGDYIEA KQETTRSRRT LHDLVESNYL SHLSFVRSDG KMEFAASQLA GLKDHQLA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)