AT3G54440.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.955 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : glycoside hydrolase family 2 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Galactose-binding domain-like (InterPro:IPR008979); Has 7598 Blast hits to 7490 proteins in 1389 species: Archae - 50; Bacteria - 5980; Metazoa - 182; Fungi - 208; Plants - 51; Viruses - 3; Other Eukaryotes - 1124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:20148494..20157019 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125418.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1107 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSLATQMIL PSENGYRVWE DQTLFKWRKR DPHVTLRCHE SVQGALRYWY QRNNVDLTVS KSAVWNDDAV QAALDSAAFW VDGLPFVKSL SGYWKFFLAP 0101: KPANVPDKFY DAAFSDSDWN ALQVPSNWQC HGFDRPIYTN VVYPFPNDPP YVPEDNPTGC YRTYFQIPKE WKDRRILLHF EAVDSAFFAW INGNPVGYSQ 0201: DSRLPAEFEI SDYCYPWDSG KQNVLAVQVF RWSDGSYLED QDHWWLSGIH RDVLLLAKPK VFIADYFFKS KLADDFSYAD IQVEVKIDNM QESSKDLVLS 0301: NFIIEAAIFD TKNWYNSEGF SCELSPKVAN LKLNPSPSPT LGFHGYLLEG KLDSPNLWSA EQPNVYILVL TLKDTSGKVL DSESSIVGIR QVSKAFKQLL 0401: VNGHPVVIKG VNRHEHHPRV GKTNIEACMV KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS GHLKHPAKEP SWAAAMLDRV 0501: VGMVERDKNH TCIISWSLGN EAGYGPNHSA MAGWIREKDP SRLVHYEGGG SRTSSTDIVC PMYMRVWDII KIALDQNESR PLILCEYQHA MGNSNGNIDE 0601: YWEAIDNTFG LQGGFIWDWV DQGLLKLGSD GIKRWAYGGD FGDQPNDLNF CLNGLIWPDR TPHPALHEVK HCYQPIKVSL TDGMIKVANT YFFNTTEELE 0701: FSWTIHGDGL ELGSGTLSIP VIKPQNSFEM EWKSGPWFSF WNDSNAGELF LTINAKLLNL TRSLEAGHLL SSTQIPLPAK GQIIPQAIKK TDTSITCETV 0801: GDFIKISQKD SWELMVNVRK GTIEGWKIQG VLLMNEAILP CFWRAPTDND KGGGDSSYFS RWKAAQLDNV EFLVESCSVK SITDKSVEIE FIYLGSSASG 0901: SSKSDALFKV NVTYLIYGSG DIITNWFVEP NSDLPPLPRV GIEFHIEKTL DRVEWYGKGP FECYPDRKAA AHVAIYEHNV GDMHVPYIVP GENGGRTDVR 1001: WVTFRNKDGV GIYASTYGSS SLMQMNASYY TTGELHRATH EEDLIKGQNI EVHLDHKHMG LGGDDSWTPC VHDKFLIPPA QYSFSLRLCP ITASTSGLNI 1101: YKDQLPC |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)