AT3G26170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.963 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cytochrome P450, family 71, subfamily B, polypeptide 19 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative cytochrome P450 | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 71, subfamily B, polypeptide 19 (CYP71B19); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 20 (TAIR:AT3G26180.1); Has 32773 Blast hits to 32510 proteins in 1671 species: Archae - 46; Bacteria - 3259; Metazoa - 12067; Fungi - 6747; Plants - 9505; Viruses - 3; Other Eukaryotes - 1146 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:9573542..9575129 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57522.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAISFLCVFL ITFVSLIFFA KKIKRSKWNL PPSPPKFPVI GNLHQIGELP HRSLQHLAER YGPVMLLHFG FVPITVVSSR EAAEEVLRTH DLDCCSRPKL 101: VGTRLLSRDF KDIGFTPYGN EWKARRKFAL RELFCLKKVQ SFRHIREEEC NFLVKQLSES AVDRSPVDLS KSLFWLTASI LFRVALGQNF HESDFIDKEK 201: IEELVFEAET ALASFTCSDF FPVAGLGWLV DWFSGQHKRL NDVFYKLDAL FQHVIDDHLN PGRSKEHEDI IDSMLDVIHK QGEDSSLELT IDHIKGFLAN 301: IFLAGIDTGA ITMIWAVTEL VKNPKLIKKV QGDIREQLGS NKERITEEDI EKVPYLKMVI KETFRLHPAA PLILPRETMA HIKVQGYDIP PKRRILVNVS 401: AIGRDPKLWT NPKEFDPERF MDSFVDYRGQ HYELLPFGSG RRICPGMPMG IAAVELGLLN LLYFFDWKLP DGMTHKDIDT EEAGTLTIVK KVPLKLVPVR 501: VQ |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)