AT3G26180.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.871 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cytochrome P450, family 71, subfamily B, polypeptide 20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
putative cytochrome P450 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cytochrome P450, family 71, subfamily B, polypeptide 20 (CYP71B20); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 19 (TAIR:AT3G26170.1); Has 32920 Blast hits to 32663 proteins in 1663 species: Archae - 46; Bacteria - 3164; Metazoa - 12063; Fungi - 6912; Plants - 9553; Viruses - 3; Other Eukaryotes - 1179 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:9578407..9579993 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57419.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAISFLCFCL ITLASLIFFA KKIKHLKWNL PPSPPKFPVI GNLHQIGELP HRSLQHLAER YGPVMLLHFG FVPVTVVSSR EAAEEVLRTH DLDCCSRPKL 101: VGTRLLSRNF KDVCFTPYGN EWKARRKFAL RELFCLKKVQ SFRHIREEEC NFLVKQLSES AVNRSPVDLS KSLFWLTASI FFRVALGQNF HESNFIDKEK 201: IEELVFEAET ALASFTCSDF FPVAGLGWLV DWFSGQHKRL NDVFYKLDAL FQHVIDDHLN PGRSKEHEDI IDSMLDAIHK EGKDSSLELI IDHIKGFLAN 301: IFLAGIDTGA LTMIWAMTEL VKNPKLIKKV QGEIREQLGS NKARITEEDI DKVPYLKMVI KETFRLHPAA PLILPRETMA HIKVQGYDIP PKRRILVNVS 401: AIGRDPKLWT NPEEFDPERF MDSSVDYRGQ HYELLPFGSG RRICPGMPMG IAAVELGLLN LLYFFDWKLP DGMTHKDIDT EEAGTLTIVK KVPLQLVPVR 501: VQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)