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AT3G26380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Melibiase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Melibiase family protein (TAIR:AT3G56310.1); Has 1323 Blast hits to 1316 proteins in 313 species: Archae - 2; Bacteria - 513; Metazoa - 306; Fungi - 224; Plants - 205; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
EC:3.2.1.22eggNOG:ENOG410ISKCeggNOG:ENOG410ZVDUEMBL:CP002686
EnsemblPlants:AT3G26380EnsemblPlants:AT3G26380.1entrez:822242Gene3D:2.60.40.1180
Gene3D:3.20.20.70GeneID:822242GO:GO:0005618GO:GO:0005975
GO:GO:0052692Gramene:AT3G26380.1gramene_pathway:3.2.1.22gramene_pathway:PWY0-1301
hmmpanther:PTHR11452hmmpanther:PTHR11452:SF14InParanoid:F4JCI4InterPro:IPR002241
InterPro:IPR013780InterPro:IPR013785InterPro:IPR017853KEGG:00052+3.2.1.22
KEGG:00561+3.2.1.22KEGG:00600+3.2.1.22KEGG:00603+3.2.1.22KEGG:ath:AT3G26380
OMA:EVYVAFFPaxDb:F4JCI4Pfam:PF16499PRIDE:F4JCI4
PRINTS:PR00740ProteinModelPortal:F4JCI4Proteomes:UP000006548RefSeq:NP_189269.2
SMR:F4JCI4STRING:3702.AT3G26380.1SUPFAM:SSF51011SUPFAM:SSF51445
TAIR:AT3G26380UniGene:At.6733UniProt:F4JCI4
Coordinates (TAIR10) chr3:+:9660140..9663145
Molecular Weight (calculated) 72346.70 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.42
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGLSVEKTG STRSTVFFII FNLSIFSLSI EARSRQQHAS FPPRGWNSYD SFCWTISEAE FLQSAEIVSK RLLPHGYQYV VVDYLWYRKK VEGAYVDSLG
101: FDVIDEWGRL HPDPGRWPSS RGGKGFTEVA EKVHRMGLKF GIHVMGGIST QAYNANSLVM DSVKGGAYEE SGRQWRAKDI GIKERACVWM SHGFMSVNTK
201: LGAGKAFLRS LYRQYAEWGV DFIKHDCVFG TDFNIEEITY VSEVLKELDR PVLYSISPGT SVTPTMAKEV SQLVNMYRIT GDDWDTWKDV TAHFDISRDL
301: SASSMIGARG LQGKSWPDLD MLPLGWLTDQ GSNVGPHRAC NLNLEEQKSQ MTLWSIAKSP LMFGGDVRNL DATTYNLITN PTLLEINSYS SNNKEFPYIT
401: ATRVSRNKHK GYPHHPTGKN ISTKHAFGLT SCKEQKANTW FIVDKNRGQI CWNQHSSEKL EKPFCLYNRK ALLASDKKLK HNQLYQGKLH LHTNDKAQSC
501: LAASSQQKLT SKDYSQGALS PCKLDANQMW ELHSNGTLEN SYSGLCAVLN PVKAAEASSN GVRSWIATGR RGEVYVAFFN LNQEKTKISA KISDIATALR
601: GKKNLVGASC TSHELWSGKD FGPTKDSVSI QVEPHGPALF VLHCSNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)