suba logo
AT4G03200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : catalytics
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
catalytics; FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF255 (InterPro:IPR004879), Thioredoxin fold (InterPro:IPR012335), Six-hairpin glycosidase-like (InterPro:IPR008928), Thioredoxin-like fold (InterPro:IPR012336); Has 2655 Blast hits to 2648 proteins in 674 species: Archae - 139; Bacteria - 1128; Metazoa - 120; Fungi - 75; Plants - 31; Viruses - 0; Other Eukaryotes - 1162 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1331eggNOG:KOG2244EMBL:CP002687EnsemblPlants:AT4G03200
EnsemblPlants:AT4G03200.1entrez:828041ExpressionAtlas:F4JI63Gene3D:1.50.10.10
Gene3D:3.40.30.10GeneID:828041GO:GO:0003824GO:GO:0009507
Gramene:AT4G03200.1hmmpanther:PTHR12145hmmpanther:PTHR12145:SF11InParanoid:F4JI63
InterPro:IPR004879InterPro:IPR008928InterPro:IPR012336InterPro:IPR012341
InterPro:IPR024705iPTMnet:F4JI63OMA:LFWDSQGPaxDb:F4JI63
Pfam:PF03190PIRSF:PIRSF006402PRIDE:F4JI63ProteinModelPortal:F4JI63
Proteomes:UP000006548RefSeq:NP_192229.3SMR:F4JI63STRING:3702.AT4G03200.1
SUPFAM:SSF48208SUPFAM:SSF52833TAIR:AT4G03200UniGene:At.3931
UniProt:F4JI63
Coordinates (TAIR10) chr4:+:1408296..1412566
Molecular Weight (calculated) 91839.60 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.39
Length 818 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMKSLHLLS SSILLHRFAS RSIASLSTLP RRRNIVRIHN PSFSSPFPPI LSRPISSGKV LAMAEESSSS STSSTSQKHT NRLAAEHSPY LLQHAHNPVD
101: WYPWGEEAFE EARKRDVPIF LSIGYSTCHW CHVMEVESFE DEEVAKLLNN SFVSIKVDRE ERPDVDKVYM SFVQALYGGG GWPLSVFLSP DLKPLMGGTY
201: FPPNDNYGRP GFKTLLKKVK DAWNSKRDTL VKSGTYAIEE LSKALSASTG ADKLSDGISR EAVSTCAKQL SRSYDSEFGG FGSAPKFPRP VEIQLMLYHY
301: KKLKESGKTS EADEEKSMVL FSLQGMANGG MHDHIGGGFH RYSVDECWHV PHFEKMLYDQ GQLANVYLDG FSITKDVMYS YVARDILDYL RRDMIAPEGG
401: IFSAEDADSF EFEGAKRKKE GAFYIWTSDE IDEVLGENAD LFKEHYYVKK SGNCDLSSRS DPHNEFAGKN VLIERNETSA MASKFSLSVE KYQEILGECR
501: RKLFDVRLKR PKPHLDDKII VSWNGLVISS FARASKILKA EPESTKYYFP VVNSQPEDYI EVAEKAALFI RGNLYDEQSR RLQHSYRQGP SKAPAFLDDY
601: AFLISGLLDL YENGGGIEWL KWAIKLQETQ DELYLDREGG AYFNTEGQDP SVLLRVKEDH DGAEPSGNSV SAINLVRLAS IVAGEKAESY LNTAHRLLAV
701: FELRLRELAV AVPLMCCSAD MISVPSRKQV VLVGSKSSPE LTNMLSAAHS VYDPNKTVIH IDPSSSDEIE FWEEHNSNVA EMAKKNRNSE KVVALVCQHF
801: TCSPPVFDSS SLTRLLSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)