suba logo
AT3G26070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26080.1); Has 483 Blast hits to 479 proteins in 86 species: Archae - 0; Bacteria - 99; Metazoa - 0; Fungi - 0; Plants - 334; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEHSeggNOG:ENOG4111HBZEMBL:AB023041EMBL:AY062689
EMBL:AY065118EMBL:AY081657EMBL:AY093379EMBL:CP002686
EnsemblPlants:AT3G26070EnsemblPlants:AT3G26070.1entrez:822204GeneID:822204
Genevisible:Q9LU85GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0010287Gramene:AT3G26070.1hmmpanther:PTHR31906hmmpanther:PTHR31906:SF14
HOGENOM:HOG000240350InterPro:IPR006843KEGG:ath:AT3G26070OMA:FSLIPIK
PaxDb:Q9LU85Pfam:PF04755Pfam:Q9LU85PhylomeDB:Q9LU85
PRIDE:Q9LU85PRO:PR:Q9LU85Proteomes:UP000006548RefSeq:NP_189236.3
STRING:3702.AT3G26070.1TAIR:AT3G26070UniGene:At.26896UniGene:At.67151
UniProt:Q9LU85
Coordinates (TAIR10) chr3:+:9526904..9528199
Molecular Weight (calculated) 27165.00 Da
IEP (calculated) 10.35
GRAVY (calculated) -0.35
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPSCLKTG ALMSPATGFN FSGSLMKSDS GFAVPTKLQS TRKGDRERLR VQAIFSFPPA FLTRNGRAEK QKQLKQELLE AIEPLERGAT ASPDDQLRID
101: QLARKVEAVN PTKEPLKSDL VNGKWELIYT TSASILQAKK PRFLRSITNY QSINVDTLKV QNMETWPFYN SVTGDIKPLN SKKVAVKLQV FKILGFIPIK
201: APDSARGELE ITYVDEELRL SRGDKGNLFI LKMFDPTYRI PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)