suba logo
AT3G26080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 376 Blast hits to 374 proteins in 78 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEHSeggNOG:ENOG4111HBZEMBL:AB023041EMBL:BT014990
EMBL:BT020596EMBL:CP002686EnsemblPlants:AT3G26080EnsemblPlants:AT3G26080.1
entrez:822205GeneID:822205Genevisible:Q6DBN2GO:GO:0009507
GO:GO:0009535Gramene:AT3G26080.1hmmpanther:PTHR31906hmmpanther:PTHR31906:SF14
HOGENOM:HOG000240350InterPro:IPR006843KEGG:ath:AT3G26080OMA:RMETWPF
PaxDb:Q6DBN2Pfam:PF04755Pfam:Q6DBN2PhylomeDB:Q6DBN2
PRIDE:Q6DBN2PRO:PR:Q6DBN2Proteomes:UP000006548RefSeq:NP_189237.2
STRING:3702.AT3G26080.1TAIR:AT3G26080UniGene:At.70372UniProt:Q6DBN2
Coordinates (TAIR10) chr3:+:9528998..9530404
Molecular Weight (calculated) 26250.10 Da
IEP (calculated) 10.14
GRAVY (calculated) -0.25
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPWCLKTG VLTSPAAGFN HPSDSGFAVP TKLLSIRKGD RERLRIQAVF SFPPRNGGAE KRKQLKHELV EAIEPLERGA TASPDDQLLI DQLARKVEAV
101: NPTKEPLKSD LINGKWELIY TTSAAILQAK KPRFLRSLTN YQCINMDTLK VQRMETWPFY NSVTGDLTPL NSKTVAVKLQ VFKILGFIPV KAPDGTARGE
201: LEITYVDEEL RISRGKGNLL FILKMFDPTY RIPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)