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AT5G59540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G59540-MONOMEREC:1.14.-.-eggNOG:COG3491eggNOG:KOG0143
EMBL:AB025604EMBL:AF424616EMBL:AK226221EMBL:BT024895
EMBL:CP002688EnsemblPlants:AT5G59540EnsemblPlants:AT5G59540.1entrez:836073
Gene3D:2.60.120.330GeneID:836073Genevisible:Q9LTH7GO:GO:0016491
GO:GO:0046872hmmpanther:PTHR10209hmmpanther:PTHR10209:SF122HOGENOM:HOG000276735
InParanoid:Q9LTH7InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443
KEGG:ath:AT5G59540OMA:YKEITISPaxDb:Q9LTH7Pfam:PF03171
Pfam:PF14226Pfam:Q9LTH7Pfscan:PS51471PhylomeDB:Q9LTH7
PRIDE:Q9LTH7PRO:PR:Q9LTH7PROSITE:PS51471ProteinModelPortal:Q9LTH7
Proteomes:UP000006548RefSeq:NP_001032104.1RefSeq:NP_200762.1SMR:Q9LTH7
STRING:3702.AT5G59540.1SUPFAM:SSF51197TAIR:AT5G59540UniGene:At.9727
UniProt:Q9LTH7
Coordinates (TAIR10) chr5:-:23996293..23997576
Molecular Weight (calculated) 41541.50 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.29
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTKNSIEFD PYIERKAFDE TKQGVKGLVD AKITEVPRIF HHRQDILTNK KPSASVSDLE IPIIDFASVH ADTASREAIV EKVKYAVENW GFFQVINHSI
101: PLNVLEEIKD GVRRFHEEDP EVKKSFFSRD AGNKKFVYNS NFDLYSSSPS VNWRDSFSCY IAPDPPAPEE IPETCRDAMF EYSKHVLSFG GLLFELLSEA
201: LGLKSQTLES MDCVKTLLMI CHYYPPCPQP DLTLGITKHS DNSFLTLLLQ DNIGGLQILH QDSWVDVSPI HGALVVNIGD FLQLITNDKF VSVEHRVLAN
301: RQGPRISVAS FFSSSMRPNS RVYGPMKELV SEENPPKYRD ITIKEYSKIF FEKGLDGTSH LSNIRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)