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AT2G24820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocon at the inner envelope membrane of chloroplasts 55-II
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
translocon at the inner envelope membrane of chloroplasts 55-II (TIC55-II); FUNCTIONS IN: oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 5409 Blast hits to 5405 proteins in 897 species: Archae - 6; Bacteria - 3841; Metazoa - 59; Fungi - 58; Plants - 409; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G24820-MONOMERBioGrid:2371eggNOG:COG4638eggNOG:ENOG410IHG9
EMBL:AC006585EMBL:AK221423EMBL:CP002685EnsemblPlants:AT2G24820
EnsemblPlants:AT2G24820.1entrez:817019Gene3D:2.102.10.10GeneID:817019
Genevisible:Q9SK50GO:GO:0009507GO:GO:0009706GO:GO:0009941
GO:GO:0010277GO:GO:0016021GO:GO:0045036GO:GO:0046872
GO:GO:0051537Gramene:AT2G24820.1hmmpanther:PTHR21266hmmpanther:PTHR21266:SF29
HOGENOM:HOG000239564InParanoid:Q9SK50InterPro:IPR013626InterPro:IPR017941
KEGG:ath:AT2G24820OMA:AKGGIGTPaxDb:Q9SK50Pfam:PF00355
Pfam:PF08417Pfam:Q9SK50Pfscan:PS51296PhylomeDB:Q9SK50
PIR:H84640PRIDE:Q9SK50PRO:PR:Q9SK50ProMEX:Q9SK50
PROSITE:PS51296ProteinModelPortal:Q9SK50Proteomes:UP000006548RefSeq:NP_180055.1
SMR:Q9SK50STRING:3702.AT2G24820.1SUPFAM:SSF50022SUPFAM:SSF55961
TAIR:AT2G24820tair10-symbols:TIC55-IITMHMM:TMhelixUniGene:At.22189
UniGene:At.69630UniProt:Q9SK50
Coordinates (TAIR10) chr2:+:10575038..10576829
Molecular Weight (calculated) 60610.90 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.28
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVPFLSSSL QLTPTSPILF TKVTPTPIIH NHRSTCTIPT KPRLRLLRRS AVAGTAVSDQ TEGGGDVLLN PEEEKRVEVA DYDWTEEWYP LYLTKNVPED
101: APLGLTVYDR QIVLYKDGEG TLRCYEDRCP HRLAKLSEGQ LIDGRLECLY HGWQFEGEGK CVKIPQLPAS AKIPKAACVK TYEVKDSQGV VWVWMSTKTP
201: PNPEKLPWFE NFARPGFFDI STTHELPYDH SILLENLMDP AHVPISHDRT DFTAKREDAQ PLVFEVTERS NRGFAGTWGR EKEGGKGSNL LRFDAPCVLQ
301: NNREFEGKDG VKNYFSGLFL CRPTGQGKSM LIVRFGVTKR SPLVSVLPQW FWHQNACKVF EQDMGFLSSQ NEVLMKEKVP TKDLYLNLKS SDTWVAEYRK
401: WMDKVGHGMP YHFGHRTISL PKVPPVVEHA PAGLIAALSA SYPAKGGIGT MHAPNLANRY FRHIIHCRSC SNVIKSFELW KNILSATAVA LTALAILVVS
501: RQWKAVLLGS AALCSAAAYT CLRAINLNTN NFIRTHRRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)