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AT4G37200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.
Computational
Description (TAIR10)
HIGH CHLOROPHYLL FLUORESCENCE 164 (HCF164); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin X (TAIR:AT1G50320.1); Has 12708 Blast hits to 12383 proteins in 2440 species: Archae - 136; Bacteria - 7708; Metazoa - 1002; Fungi - 428; Plants - 950; Viruses - 3; Other Eukaryotes - 2481 (source: NCBI BLink).
Protein Annotations
BioGrid:15155eggNOG:COG0526eggNOG:KOG0907EMBL:AJ293262
EMBL:AL161590EMBL:AY075671EMBL:AY097426EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G37200EnsemblPlants:AT4G37200.1entrez:829874
Gene3D:3.40.30.10GeneID:829874Genevisible:O23166GO:GO:0000103
GO:GO:0006457GO:GO:0006662GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0010190GO:GO:0015035GO:GO:0016671
GO:GO:0031977GO:GO:0034599GO:GO:0045454Gramene:AT4G37200.1
hmmpanther:PTHR10438hmmpanther:PTHR10438:SF272HOGENOM:HOG000232501InParanoid:O23166
InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766iPTMnet:O23166
KEGG:ath:AT4G37200OMA:PKQYLLEPANTHER:PTHR10438PaxDb:O23166
Pfam:O23166Pfam:PF00085Pfscan:PS51352PhylomeDB:O23166
PIR:E85439PRIDE:O23166PRO:PR:O23166PROSITE:PS51352
ProteinModelPortal:O23166Proteomes:UP000006548RefSeq:NP_195437.1SMR:O23166
STRING:3702.AT4G37200.1SUPFAM:SSF52833TAIR:AT4G37200tair10-symbols:HCF164
TCDB:3.D.3.5.2UniGene:At.31265UniGene:At.48077UniProt:O23166
Coordinates (TAIR10) chr4:-:17509836..17511230
Molecular Weight (calculated) 28746.50 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.40
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLVFSLNL PSSHGFNLSP RNLQSFFVTQ TGAPRFRAVR CKPNPESSET KQEKLVIDNG ETSSASKEVE SSSSVADSSS SSSSGFPESP NKDINRRVAA
101: VTVIAALSLF VSTRLDFGIS LKDLTASALP YEEALSNGKP TVVEFYADWC EVCRELAPDV YKIEQQYKDK VNFVMLNVDN TKWEQELDEF GVEGIPHFAF
201: LDREGNEEGN VVGRLPRQYL VENVNALAAG KQSIPYARAV GQYSSSESRK VHQVTDPLSH G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)