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AT3G17340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.1); Has 9009 Blast hits to 4794 proteins in 333 species: Archae - 21; Bacteria - 366; Metazoa - 3391; Fungi - 1120; Plants - 417; Viruses - 382; Other Eukaryotes - 3312 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEBSeggNOG:ENOG410ZNAWEMBL:CP002686EnsemblPlants:AT3G17340
EnsemblPlants:AT3G17340.1entrez:820997ExpressionAtlas:F4J550Gene3D:1.25.10.10
GeneID:820997GO:GO:0005622GO:GO:0006886Gramene:AT3G17340.1
hmmpanther:PTHR10997hmmpanther:PTHR10997:SF29InterPro:IPR001494InterPro:IPR011989
InterPro:IPR016024iPTMnet:F4J550ncoils:CoilPaxDb:F4J550
Pfam:PF03810PhylomeDB:F4J550PRIDE:F4J550ProteinModelPortal:F4J550
Proteomes:UP000006548RefSeq:NP_188360.3STRING:3702.AT3G17340.2SUPFAM:SSF48371
TAIR:AT3G17340UniGene:At.38742UniProt:F4J550
Coordinates (TAIR10) chr3:-:5920613..5926846
Molecular Weight (calculated) 121359.00 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.01
Length 1090 amino acids
Sequence (TAIR10)
(BLAST)
0001: MFVGDDDSVQ IVRLLDQTLT SIDGVSVREA TEALDLLSTK LPHFPYRLLS IASGSENPSL KVAAATYLKN FTRKSTGTEG TISEVSKEFK DQLLLALLQA
0101: EPAVLKVLLE LLHIVVVSEF VRKNAWPKLV PELRSAIEKS SLISSSNSSW STVNALMVLL TVVKPFQYFL QPKLAKEPVP QQLESIAREI LVPLVSVLHR
0201: LIDKALTTHG WDELELEKTL HIICKCLYFS VKSHMPSALS PLLGSFCQDM IRILDSLSFD WSVTPSDGYL IRSKAGKRSL LLFCTLVSRH RKYSDKLVPE
0301: IINCSMKIVK HSSNIGKLGC LTERIISLAF DVISRVMEIG PGWRLLSPHF SFLLDSAIFP ALVLNERDIS EWEEDADEFI RKNLPSELEE ISGWRDDLFT
0401: ARKSAMNLLC VLAMSKGPPV STTNTASPAA CKRKKGEKNR GNNQRCMGDL LVLPFLSKFP VPSKSYKLDA STSAAYFGVL MAYGSLQEFI QEQNPEYVAS
0501: FVRTRVLPIY STPDCSPYLV ASANWVLGEL ASCLPEEMNA DVFSSLLKAL AMPDQVEISC YPVRFSAAGG IGSLLENEYQ PPELLPLLQF ITGKIGNEED
0601: EDSMLFQLLK SVVESGNQDI AMHIPYIVSS LVSNMLKFMH PSEDPWSQAI LGGLETLAAM TQTYESSKPE ADEENNQATE IWLTGQGTIS KALSALLQHA
0701: WLATDVPPTS CIDHLSTMLR FIVIAATNCN VFVELRLTDL LIVWADILAS WNGWEESEDL SVFDCIEEVV GINNKYGFRS FLFRDIPSPP AMPVRPRSVV
0801: ESIGSFVSKA ILEYPSATRR ACSCVHTLLY VPDYSSDIEG VGKSLAMVFA ESAFSHFLAL REKPCTLWRP LLLAISSCYI SYSDIVEGVL EKVISGGFEL
0901: WVSSLAFSYS LTCDDSPSVV SEVKLYVMTL VKVIEHLLDV RHGNATDDLA RKCFVSLMEA SRRLKEVNEE TDDDEDDGEP GEEETESEET DSNDEDSESD
1001: ECEETEEEFL ERYAKVAAEL EDSEVIEEAD EEDDDHEIDL GSLNEIDPQK LVLSLMEKHH QKVINLVPSE AISTFLNSFP IYTSLFSKCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)