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AT5G50340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases; FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA repair, proteolysis, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair protein RadA (InterPro:IPR004504), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 8098 Blast hits to 8084 proteins in 2420 species: Archae - 172; Bacteria - 6133; Metazoa - 8; Fungi - 0; Plants - 82; Viruses - 9; Other Eukaryotes - 1694 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1066eggNOG:ENOG410IFJ4EMBL:AK226617EMBL:CP002688
EnsemblPlants:AT5G50340EnsemblPlants:AT5G50340.1entrez:835101Gene3D:3.30.230.10
Gene3D:3.40.50.300GeneID:835101GO:GO:0003684GO:GO:0005524
GO:GO:0006281GO:GO:0008094Gramene:AT5G50340.1hmmpanther:PTHR32472
hmmpanther:PTHR32472:SF10HOGENOM:HOG000218329InterPro:IPR003593InterPro:IPR004504
InterPro:IPR014721InterPro:IPR020568InterPro:IPR020588InterPro:IPR027417
KEGG:ath:AT5G50340KO:K04485MEROPS:S16.A04OMA:SYVCSNC
Pfam:PF13481Pfam:PF13541Pfscan:PS50162PhylomeDB:Q0WVW9
PRINTS:PR01874PROSITE:PS50162Proteomes:UP000006548RefSeq:NP_199845.3
SMART:SM00382SMR:Q0WVW9STRING:3702.AT5G50340.1SUPFAM:SSF52540
SUPFAM:SSF54211TAIR:AT5G50340TIGRfam:TIGR00416TIGRFAMs:TIGR00416
UniGene:At.50521UniProt:Q0WVW9
Coordinates (TAIR10) chr5:-:20491635..20495830
Molecular Weight (calculated) 63094.10 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.04
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MLIADMRCFR CFYTRAHSLL LLRSSNPVTV PISPVRFRLR LRRLSSSPVA SVFDLHSSNQ DANSNREDKD TKIGFSDDKS RKSGSNPPRW NPGEVVMNKS
101: KKGKSKTVWV CESCGHSEGQ WWGSCRACHK VGTMKRFSEG SESSASGGGG NGTGLGFTEG KGLSWLPEQA TVQPHRLTDV IHGITQQQWR ISLPGLFGNE
201: VARVLGGGLA PGSLILIGGD PGIGKSTLLL QIASIIAEGS ELAEPAPVLY ISGEESVEQI GSRADRMRIQ TEELYLFSSS DLQDILNKAH RLSPRALIID
301: SIQTVYLKDV TGSAGGLTQV KECTSTLLRF AKKSNIPVFL VGHVTKAGDI AGPRVLEHIV DVVLYLEGEE SSTYRLLRSV KNRFGSTDEL GVFEMANSGL
401: EVVSNPSGIY LSQQNPDSDV LAGLAVAVVM DGSRSFLIEV QALCSPGSTV SRHVNGVQAS RADMIIAVLM KQAGLRIQEN GIFLNVANGM ALSETAGDLA
501: IAAAICSSFL EFPIPHGVAF IGEIGLGGEV RTVPRMEKRV STVAKLGFNK CVVPKSVEES LKALSLKEIE IIGCKNLKEL INAVFKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)