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AT5G21060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glyceraldehyde-3-phosphate dehydrogenase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: homoserine dehydrogenase activity; INVOLVED IN: cellular amino acid biosynthetic process, aspartate family amino acid biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homoserine dehydrogenase, short (InterPro:IPR022697), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 7499 Blast hits to 7499 proteins in 2310 species: Archae - 181; Bacteria - 5347; Metazoa - 3; Fungi - 160; Plants - 133; Viruses - 0; Other Eukaryotes - 1675 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2545-MONOMEREC:1.1.1.3eggNOG:COG0460eggNOG:KOG0455
EMBL:BT004002EMBL:BT005655EMBL:CP002688EnsemblPlants:AT5G21060
EnsemblPlants:AT5G21060.1entrez:832230ExpressionAtlas:Q84JZ4Gene3D:3.40.50.720
GeneID:832230GO:GO:0004412GO:GO:0009086GO:GO:0009088
GO:GO:0009097Gramene:AT5G21060.1gramene_pathway:1.1.1.3gramene_pathway:2.7.2.4
gramene_pathway:HOMOSERSYN-PWYgramene_pathway:PWY-5097gramene_plant_reactome:1119295gramene_plant_reactome:6874748
hmmpanther:PTHR21499hmmpanther:PTHR21499:SF33HOGENOM:HOG000024037InterPro:IPR001342
InterPro:IPR016040InterPro:IPR019811InterPro:IPR022697KEGG:00260+1.1.1.3
KEGG:00270+1.1.1.3KEGG:00300+1.1.1.3Pfam:PF00742PhylomeDB:Q84JZ4
PIRSF:PIRSF036497PROSITE:PS01042Proteomes:UP000006548RefSeq:NP_197605.1
scanprosite:PS01042SMR:Q84JZ4STRING:3702.AT5G21060.2SUPFAM:SSF51735
SUPFAM:SSF55347TAIR:AT5G21060UniGene:At.20914UniGene:At.66690
UniPathway:UPA00050UniPathway:UPA00051UniProt:Q84JZ4
Coordinates (TAIR10) chr5:-:7149153..7152745
Molecular Weight (calculated) 40415.60 Da
IEP (calculated) 6.73
GRAVY (calculated) 0.10
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)