suba logo
AT2G41280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : late embryogenesis abundant protein (M10) / LEA protein M10
Curator
Summary (TAIR10)
Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.
Computational
Description (TAIR10)
M10; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, seed dormancy; LOCATED IN: extracellular region; BEST Arabidopsis thaliana protein match is: glycine-rich protein / late embryogenesis abundant protein (M17) (TAIR:AT2G41260.1); Has 28 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC005662EMBL:AF076979EMBL:CP002685EnsemblPlants:AT2G41280
EnsemblPlants:AT2G41280.1entrez:818727GeneID:818727GO:GO:0005576
GO:GO:0005773GO:GO:0005783GO:GO:0010162Gramene:AT2G41280.1
HOGENOM:HOG000115156KEGG:ath:AT2G41280PhylomeDB:O81483PIR:H84839
Proteomes:UP000006548RefSeq:NP_181660.1STRING:3702.AT2G41280.1TAIR:AT2G41280
tair10-symbols:ATM10tair10-symbols:M10TMHMM:TMhelixUniGene:At.43383
UniProt:O81483
Coordinates (TAIR10) chr2:+:17209763..17210211
Molecular Weight (calculated) 11432.50 Da
IEP (calculated) 4.08
GRAVY (calculated) -0.01
Length 107 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLMSLVLV ALLFSLSLAV IADTSNDATH VKEEVKPSTE ATDAIEAEVE VNDAVVEPQQ GLPGGGCRFG CCGGYWWNGL CIYCCRSQAE ANEVVKTVEP
101: QKEEAKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)