suba logo
AT2G38290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ammonium transporter 2
Curator
Summary (TAIR10)
encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
Computational
Description (TAIR10)
ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-297-MONOMERBioGrid:3751eggNOG:COG0004eggNOG:KOG0682
EMBL:AC003028EMBL:AF182039EMBL:AK226212EMBL:BT025321
EMBL:BX819203EMBL:CP002685EnsemblPlants:AT2G38290EnsemblPlants:AT2G38290.1
entrez:818409Gene3D:1.10.3430.10GeneID:818409Genevisible:Q9M6N7
GO:GO:0005886GO:GO:0005887GO:GO:0006995GO:GO:0009506
GO:GO:0009624GO:GO:0015398GO:GO:0015695GO:GO:0015696
GO:GO:0019740hmmpanther:PTHR11730hmmpanther:PTHR11730:SF38HOGENOM:HOG000017736
InParanoid:Q9M6N7InterPro:IPR001905InterPro:IPR002229InterPro:IPR018047
InterPro:IPR024041InterPro:IPR029020KEGG:ath:AT2G38290KO:K03320
OMA:EISAQHVPANTHER:PTHR11730PaxDb:Q9M6N7Pfam:PF00909
Pfam:Q9M6N7PhylomeDB:Q9M6N7PIR:T01260PRIDE:Q9M6N7
PRINTS:PR00342PRO:PR:Q9M6N7PROSITE:PS01219ProteinModelPortal:Q9M6N7
Proteomes:UP000006548RefSeq:NP_181363.1RefSeq:NP_973634.1SABIO-RK:Q9M6N7
scanprosite:PS01219SMR:Q9M6N7STRING:3702.AT2G38290.1SUPFAM:0044218
SUPFAM:SSF111352TAIR:AT2G38290tair10-symbols:AMT2tair10-symbols:AMT2;1
tair10-symbols:ATAMT2TCDB:1.A.11.2.2TIGRfam:TIGR00836TIGRFAMs:TIGR00836
TMHMM:TMhelixUniGene:At.11996UniGene:At.70096UniProt:Q9M6N7
Coordinates (TAIR10) chr2:-:16039672..16042291
Molecular Weight (calculated) 50771.10 Da
IEP (calculated) 7.64
GRAVY (calculated) 0.54
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAYDPSLP EVPEWLNKGD NAWQLTAATL VGLQSMPGLV ILYASIVKKK WAVNSAFMAL YAFAAVLLCW VLLCYKMAFG EELLPFWGKG GPAFDQGYLK
101: GQAKIPNSNV AAPYFPMATL VYFQFTFAAI TTILVAGSVL GRMNIKAWMA FVPLWLIFSY TVGAYSIWGG GFLYQWGVID YSGGYVIHLS SGVAGFVAAY
201: WVGPRPKADR ERFPPNNVLL MLAGAGLLWM GWSGFNGGAP YAANLTSSIA VLNTNLSAAT SLLVWTTLDV IFFGKPSVIG AIQGMVTGLA GVTPGAGLIQ
301: TWAAIIIGVV SGTAPWASMM IIHKKSALLQ KVDDTLAVFY THAVAGLLGG IMTGLFAHPD LCVLVLPLPA TRGAFYGGNG GKQLLKQLAG AAFIAVWNVV
401: STTIILLAIR VFIPLRMAEE ELGIGDDAAH GEEAYALWGD GEKFDATRHV QQFERDQEAA HPSYVHGARG VTIVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)