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AT4G17070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.726
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peptidyl-prolyl cis-trans isomerases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peptidyl-prolyl cis-trans isomerases; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); Has 214 Blast hits to 208 proteins in 48 species: Archae - 0; Bacteria - 43; Metazoa - 9; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIYReggNOG:ENOG4111HJGEMBL:AY056438EMBL:AY143891
EMBL:CP002687EnsemblPlants:AT4G17070EnsemblPlants:AT4G17070.1entrez:827415
Gene3D:2.40.100.10GeneID:827415GO:GO:0003755GO:GO:0006457
GO:GO:0006979GO:GO:0016021Gramene:AT4G17070.1hmmpanther:PTHR33344
hmmpanther:PTHR33344:SF2HOGENOM:HOG000030684InterPro:IPR002130InterPro:IPR029000
KEGG:ath:AT4G17070OMA:VFCGNKEPfam:PF00160Pfscan:PS51257
PhylomeDB:Q93ZN3Proteomes:UP000006548RefSeq:NP_567522.5STRING:3702.AT4G17070.1
SUPFAM:SSF50891TAIR:AT4G17070TMHMM:TMhelixUniGene:At.4458
UniProt:Q93ZN3
Coordinates (TAIR10) chr4:-:9595523..9598066
Molecular Weight (calculated) 37670.80 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.22
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRRLNDGEP GRFTATVLLL IGLISCVIVY AVFSSVLRPS QDPTLVDSAV RFKEEPRDHD ATEDGEGGCC RGIDNLELWG PAVKWGTDFK FNSSDGCCKA
101: CKVMCSGNDG PCLCDSWVFC GNKEDCGSKF GECWLKKQKD VLVPDRQGGG EKVMWTSGLI FGQGQGIVGF ETEHGVIHVK LHPECAPHSV YYILSLLTLR
201: HCAGCQFHRA ENRGSYWDSE GNHVKNAPFG PPYAMIQGIL QAEGNIFTPI PTEHCPTISR GSVAWVGSGP EFFISLANHH EWKQSYTVFG LVLPEDMDVV
301: ETIAGLPTRA DVWNSVNVSV LEKPVSLTVR RMKTGQEQEE TGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)