AT1G01340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.825 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclic nucleotide gated channel 10 | ||||||||||||||||
| Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||
| Computational Description (TAIR10) |
cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:132414..135118 | ||||||||||||||||
| Molecular Weight (calculated) | 81346.10 Da | ||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILFRFKDEG KPLSSEYGYG RKARPSLDRV FKNVKWGFKK PLSFPSHKDP DHKETSSVTR KNIINPQDSF LQNWNKIFLF ACVVALAIDP LFFYIPIVDS 101: ARHCLTLDSK LEIAASLLRT LIDAFYIIHI VFQFRTAYIA PSSRVFGRGE LVDDAKAIAL KYLSSYFIID LLSILPLPQI VVLAVIPSVN QPVSLLTKDY 201: LKFSIIAQYV PRILRMYPLY TEVTRTSGIV TETAWAGAAW NLSLYMLASH VFGALWYLIS VEREDRCWQE ACEKTKGCNM KFLYCENDRN VSNNFLTTSC 301: PFLDPGDITN STIFNFGIFT DALKSGVVES HDFWKKFFYC FWWGLRNLSA LGQNLQTSKF VGEIIFAISI CISGLVLFAL LIGNMQKYLE STTVREEEMR 401: VRKRDAEQWM SHRMLPEDLR KRIRRYEQYR WQETRGVEEE TLLRNLPKDL RRDIKRHLCL DLLKKVPLFE IMDEQLLDAV CDRLRPVLYT ENSYVIREGD 501: PVGEMLFVMR GRLVSATTNG GRSGFFNAVN LKASDFCGED LLPWALDPQS SSHFPISTRT VQALTEVEAF ALTAEDLKSV ASQFRRLHSK QLQHTFRFYS 601: VQWRTWSVSF IQAAWRRYCR RKLAKSLRDE EDRLREALAS QDKEHNAATV SSSLSLGGAL YASRFASNAL HNLRHNISNL PPRYTLPLLP QKPTEPDFTA 701: NHTTDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)