AT4G01010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.190 plasma membrane 0.188 golgi 0.166 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cyclic nucleotide-gated channel 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:434569..437242 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 80478.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 696 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAFGRNNRVR FRDWISEGTE YGYGRNKARP SLNTVLKNVR RGLKKPLSFG SHNKKRDSNS STTTQKNIIN PQGSFLQNWN KIFLFASVIA LAIDPLFFYI 101: PIVDGERHCL NLHRNLEIAA SVLRTFIDAF YIIHIVFQFR TAYISPSSRV FGRGELVDDP KAIAIKYLSS YFIIDLLSIL PLPQLVVLAV IPNVNKPVSL 201: ITKDYLITVI FTQYIPRILR IYPLYTEVTR TSGIVTETAW AGAAWNLSLY MLASHVFGAL WYLISVERED RCWREACEKI PEVCNFRFLY CDGNSSVRND 301: FLTTSCPFIN PDDITNSTVF NFGIFTDALK SGIVESDDFW KKFFYCFWWG LRNLSALGQN LNTSKFVGEI IFAVSICISG LVLFALLIGN MQKYLESTTV 401: REEEMRVRKR DAEQWMSHRM LPDDLRKRIR RYEQYKWQET RGVEEENLLR NLPKDLRRDI KRHFCLDLLK KVPLFEIMDE QLLDAVCDKL KPVLYTENSY 501: AIREGDPVEE MLFVMRGKLM SATTNGGRTG FFNAVYLKPS DFCGEDLLTW ALDPQSSSHF PISTRTVQAL TEVEAFALAA DDLKLVASQF RRLHSKQLQH 601: TFRFYSVQWR TWGASFIQAA WRRHCRRKLA RSLTEEEDRF RNAITKRERN AASSSSLVAT LYASRFASNA LRNLRTNNLP LLPPKPSEPD FSLRNP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)