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AT4G26120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein / BTB/POZ domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein / BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), NPR1/NIM1 like, C-terminal (InterPro:IPR021094), BTB/POZ fold (InterPro:IPR011333), Ankyrin repeat-containing domain (InterPro:IPR020683), BTB/POZ-like (InterPro:IPR000210), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: regulatory protein (NPR1) (TAIR:AT1G64280.1); Has 2068 Blast hits to 1653 proteins in 155 species: Archae - 0; Bacteria - 76; Metazoa - 627; Fungi - 31; Plants - 645; Viruses - 9; Other Eukaryotes - 680 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59899NeggNOG:COG0666eggNOG:KOG0504EMBL:AL049483
EMBL:AL161564EMBL:CP002687EnsemblPlants:AT4G26120EnsemblPlants:AT4G26120.1
entrez:828718Gene3D:1.25.40.20GeneID:828718Genevisible:Q9SZI3
GO:GO:0010200GO:GO:0016567Gramene:AT4G26120.1hmmpanther:PTHR24198
hmmpanther:PTHR24198:SF66HOGENOM:HOG000240298InParanoid:Q9SZI3InterPro:IPR000210
InterPro:IPR002110InterPro:IPR011333InterPro:IPR020683InterPro:IPR021094
InterPro:IPR024228KEGG:ath:AT4G26120KO:K14508OMA:HEQKLEY
PaxDb:Q9SZI3Pfam:PF00023Pfam:PF00651Pfam:PF11900
Pfam:PF12313Pfam:PF13857Pfam:Q9SZI3Pfscan:PS50088
Pfscan:PS50097Pfscan:PS50297PhylomeDB:Q9SZI3PIR:T04267
PRIDE:Q9SZI3PRO:PR:Q9SZI3PROSITE:PS50088PROSITE:PS50097
PROSITE:PS50297ProteinModelPortal:Q9SZI3Proteomes:UP000006548RefSeq:NP_194342.1
SMART:SM00225SMART:SM00248SMR:Q9SZI3STRING:3702.AT4G26120.1
SUPFAM:SSF48403SUPFAM:SSF54695TAIR:AT4G26120UniGene:At.54516
UniPathway:UPA00143UniProt:Q9SZI3
Coordinates (TAIR10) chr4:+:13236448..13238487
Molecular Weight (calculated) 68010.00 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.21
Length 600 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTTTTTA RFSDSYEFSN TSGNSFFAAE SSLDYPTEFL TPPEVSALKL LSNCLESVFD SPETFYSDAK LVLAGGREVS FHRCILSARI PVFKSALATV
101: KEQKSSTTVK LQLKEIARDY EVGFDSVVAV LAYVYSGRVR SPPKGASACV DDDCCHVACR SKVDFMVEVL YLSFVFQIQE LVTLYERQFL EIVDKVVVED
201: ILVIFKLDTL CGTTYKKLLD RCIEIIVKSD IELVSLEKSL PQHIFKQIID IREALCLEPP KLERHVKNIY KALDSDDVEL VKMLLLEGHT NLDEAYALHF
301: AIAHCAVKTA YDLLELELAD VNLRNPRGYT VLHVAAMRKE PKLIISLLMK GANILDTTLD GRTALVIVKR LTKADDYKTS TEDGTPSLKG GLCIEVLEHE
401: QKLEYLSPIE ASLSLPVTPE ELRMRLLYYE NRVALARLLF PVETETVQGI AKLEETCEFT ASSLEPDHHI GEKRTSLDLN MAPFQIHEKH LSRLRALCKT
501: VELGKRYFKR CSLDHFMDTE DLNHLASVEE DTPEKRLQKK QRYMELQETL MKTFSEDKEE CGKSSTPKPT SAVRSNRKLS HRRLKVDKRD FLKRPYGNGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)