suba logo
AT2G37678.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : far-red elongated hypocotyl 1
Curator
Summary (TAIR10)
Positive regulator of photomorphogenesis in far-red light. Most abundant in young seedlings in the dark. Downregulated in the light and older as plants develop. Localized in the nucleus and the cytoplasm. Nuclear localization strongest in the dark. Degraded through the 26S proteasome. Regulated by PHYA. It is specifically required for the light-regulated nuclear accumulation of phyA but not phyB.
Computational
Description (TAIR10)
far-red elongated hypocotyl 1 (FHY1); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: maintenance of protein location in nucleus, response to red or far red light, response to far red light, photomorphogenesis; LOCATED IN: nuclear body, nucleus, cytoplasm; EXPRESSED IN: hypocotyl; BEST Arabidopsis thaliana protein match is: far-red-elongated hypocotyl1-like (TAIR:AT5G02200.2); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5073eggNOG:KOG4635EMBL:AF424739EMBL:AK229717
EMBL:CP002685EMBL:HM029242EnsemblPlants:AT2G37678EnsemblPlants:AT2G37678.1
entrez:5007942GeneID:5007942GO:GO:0005634GO:GO:0005737
GO:GO:0009639GO:GO:0009640GO:GO:0010218GO:GO:0016604
GO:GO:0045893GO:GO:0051457Gramene:AT2G37678.1hmmpanther:PTHR37723
hmmpanther:PTHR37723:SF2IntAct:Q8S4Q6KEGG:ath:AT2G37678OMA:RKFQTDQ
PhylomeDB:Q8S4Q6Proteomes:UP000006548RefSeq:NP_001078018.1STRING:3702.AT2G37678.1
TAIR:AT2G37678tair10-symbols:FHY1tair10-symbols:FRY1tair10-symbols:PAT3
UniGene:At.70445UniProt:Q8S4Q6
Coordinates (TAIR10) chr2:-:15801689..15802696
Molecular Weight (calculated) 23014.30 Da
IEP (calculated) 4.05
GRAVY (calculated) -0.79
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MPEVEVDNNN EKPSEINSFH HMIISSSKNV LKMEEVEVSK KRKFQTDQSD ELSLLPLSKH TCFANVACSE NTNGNSEIDT EYSMSSYVNS TTSMECNNDI
101: EMKEESSGSC GEDKMISFES HLDYIYGTQN LEDFSEKVIE NILYLDEQEE EEEDAKGCSS NAAKFVLSSG RWTVNQDDST LHETKKPTID QEFEQYFSTL
201: ML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)