AT5G02200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : far-red-elongated hypocotyl1-like | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
far-red-elongated hypocotyl1-like (FHL); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyl 1 (TAIR:AT2G37678.1); Has 27 Blast hits to 27 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:438221..438852 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 20233.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.24 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 181 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIVAVESLDT SKKRKLHAEE SDLLPLPKHF CSEHQASLVN SSCPSSVIDY AECSYAMENT KTSDEASSSA SFTGPSLYMF KDSIYSTGSS SSGYAATSSI 101: EQCFSKVDHK TQEDTQDFTH MEFIYHDSEF AVEDLQEVLN PVESYILSSA RWSVSNQDSK EATTKPTIDQ EFEQYFSTLM M |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)