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AT4G27740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Yippee family putative zinc-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT4G27745.1); Has 984 Blast hits to 980 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 211; Plants - 235; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111VJ1eggNOG:KOG3399EMBL:AK229353EMBL:AL035602
EMBL:AL161571EMBL:CP002687EnsemblPlants:AT4G27740EnsemblPlants:AT4G27740.1
entrez:828888GeneID:828888GO:GO:0046872Gramene:AT4G27740.1
hmmpanther:PTHR13848hmmpanther:PTHR13848:SF11HOGENOM:HOG000184254InterPro:IPR004910
KEGG:ath:AT4G27740OMA:RICQNPIPaxDb:Q2V3E2Pfam:PF03226
Pfam:Q2V3E2PhylomeDB:Q2V3E2PIR:T05879PRIDE:Q2V3E2
PRO:PR:Q2V3E2PROSITE:PS51792ProteinModelPortal:Q2V3E2Proteomes:UP000006548
RefSeq:NP_194504.2SMR:Q2V3E2STRING:3702.AT4G27740.1TAIR:AT4G27740
UniGene:At.32071UniProt:Q2V3E2
Coordinates (TAIR10) chr4:+:13839148..13839616
Molecular Weight (calculated) 11781.60 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.04
Length 105 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANKTLPTY FCRNCENPLA LGEDLISKKF VGASGPAFMF SHAMNVVVGP KIGRKLITGS YVVADVMCSK CGETLGWKYV ETFDLKQRYK EGMFVIEKLK
101: LTKRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)