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AT2G15280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.731
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G19460.1); Has 1097 Blast hits to 1097 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 625; Fungi - 2; Plants - 455; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:1376eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AC007267
EMBL:BT010716EMBL:BT010986EMBL:BX821446EMBL:CP002685
EnsemblPlants:AT2G15280EnsemblPlants:AT2G15280.1entrez:816017GeneID:816017
Genevisible:Q6NPD8GO:GO:0005789GO:GO:0016021hmmpanther:PTHR10994
hmmpanther:PTHR10994:SF77HOGENOM:HOG000237479InParanoid:Q6NPD8InterPro:IPR003388
KEGG:ath:AT2G15280OMA:EKCGYSFPaxDb:Q6NPD8Pfam:PF02453
Pfam:Q6NPD8Pfscan:PS50845PhylomeDB:Q6NPD8PIR:A84527
PRO:PR:Q6NPD8PROSITE:PS50845ProteinModelPortal:Q6NPD8Proteomes:UP000006548
RefSeq:NP_179130.2RefSeq:NP_973467.1STRING:3702.AT2G15280.1TAIR:AT2G15280
TMHMM:TMhelixUniGene:At.22376UniGene:At.40435UniProt:Q6NPD8
Coordinates (TAIR10) chr2:+:6640191..6641414
Molecular Weight (calculated) 23484.30 Da
IEP (calculated) 10.26
GRAVY (calculated) 0.41
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MEESVHQSIR FGSVADLIMW KNRRGGFLLL GSTTLLWFLF EKCGYSFFPF VVNTQLLSVV ILFLWAKSAI LFNRPMPQLP NLEITEEFVF MVADAIRVWI
101: NTVLAVAREI YVGRNAKQLF RVSVVLWTVS FVGNFLNFLT ILYLGVVLSL LIPFLYERYQ DLIDEKLSLT HRVIQTQYRK IDERLLQKII AKPTNKIKKM
201: Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)