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AT5G27490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integral membrane Yip1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G05280.1); Has 530 Blast hits to 529 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 113; Plants - 90; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110TJReggNOG:KOG3114EMBL:CP002688EnsemblPlants:AT5G27490
EnsemblPlants:AT5G27490.1entrez:832808GeneID:832808GO:GO:0016021
Gramene:AT5G27490.1hmmpanther:PTHR12822InParanoid:F4K4B8InterPro:IPR006977
KEGG:ath:AT5G27490OMA:NSAGERWPaxDb:F4K4B8Pfam:PF04893
PRIDE:F4K4B8ProteinModelPortal:F4K4B8Proteomes:UP000006548RefSeq:NP_198101.2
STRING:3702.AT5G27490.1TAIR:AT5G27490TMHMM:TMhelixUniGene:At.30804
UniProt:F4K4B8
Coordinates (TAIR10) chr5:-:9703130..9704653
Molecular Weight (calculated) 31163.70 Da
IEP (calculated) 7.54
GRAVY (calculated) 0.36
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMSGGSYTN IDHQKVSGSV PAVPDPGHVT VKFADSNLQT FPPSATQGKI SGGTNPPRDA DDTFSRPVNG TTDEPQSSGW LHRFTVGAYK PYFDVDTSDV
101: VERLKESLFP FRGTFTEKTA NNPDLYGPFW ICTTLIFVAA SIGTFVTYIA HKLKKQEWNY DINLVTWSAG VFYGYVTIVP LALYVVLKYF SAPSGLVQLF
201: CLYGYSLFVF IPALCLSVVP LEIFRWVIAG LAGFMSATFV ALNLKAHINS AGERWFLIVV SIFLLQLALS VVLKLYLFTV TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)