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AT1G65730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : YELLOW STRIPE like 7
Curator
Summary (TAIR10)
Arabidopsis thaliana metal-nicotianamine transporter YSL4
Computational
Description (TAIR10)
YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2295-MONOMEReggNOG:COG1297eggNOG:ENOG410IEEYEMBL:AC007234
EMBL:AY515565EMBL:BT002954EMBL:BT006077EMBL:CP002684
EnsemblPlants:AT1G65730EnsemblPlants:AT1G65730.1entrez:842884GeneID:842884
Genevisible:Q9SHY2GO:GO:0005886GO:GO:0016021GO:GO:0055085
Gramene:AT1G65730.1hmmpanther:PTHR31645hmmpanther:PTHR31645:SF1HOGENOM:HOG000237697
InParanoid:Q9SHY2InterPro:IPR004813KEGG:ath:AT1G65730OMA:MYIIAPV
PaxDb:Q9SHY2Pfam:PF03169Pfam:Q9SHY2PhylomeDB:Q9SHY2
PIR:H96681PRIDE:Q9SHY2PRO:PR:Q9SHY2ProteinModelPortal:Q9SHY2
Proteomes:UP000006548RefSeq:NP_176750.1STRING:3702.AT1G65730.1TAIR:AT1G65730
tair10-symbols:YSL7TCDB:2.A.67.2.9TIGRfam:TIGR00728TIGRFAMs:TIGR00728
TMHMM:TMhelixUniGene:At.35849UniProt:Q9SHY2
Coordinates (TAIR10) chr1:+:24442639..24446122
Molecular Weight (calculated) 75705.20 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.47
Length 688 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVERSKKDD DLNNGSKSNE EEEISVERIF EESNEIPPPW QKQLTFRALI VSFILAILFT FVVMKLNLTT GIIPSLNISA GLLGFFFVKS WTKILNKAGF
101: LKQPFTRQEN TVIQTCVVAS SGIAFSGGFG SYLFGMSDVV AKQSAEANTP LNIKNPHLGW MIGFLFVVSF LGLFSVVPLR KIMIVDFKLT YPSGTATAHL
201: INSFHTPQGA KLAKKQVRAL GKFFSFSFLW GFFQWFFATG DGCGFANFPT FGLKAYENKF YFDFSATYVG VGMICPYLIN VSLLIGAILS WGVMWPLIGA
301: QKGKWYAADL SSTSLHGLQG YRVFIAIAMI LGDGLYNFIK VLGRTVFGLY KQFKNKDVLP INDHTSTAPV TISYDDKRRT ELFLKDRIPS WFAVTGYVVL
401: AIVSIITVPH IFHQLKWYHI LIMYIIAPVL AFCNAYGCGL TDWSLASTYG KLAIFTIGAW AGASNGGVLA GLAACGVMMN IVSTASDLMQ DFKTGYMTLA
501: SPRSMFLSQA IGTAMGCVIS PCVFWLFYKA FPDFGQPGTA YPAPYALVYR NMSILGVEGF SALPKHCLML CYIFFAAAVI VNGIRDALGP KWARFIPLPM
601: AMAIPFYLGG YFTIDMCLGS LILFIWRKLN KPKADAYSSA VASGLICGEG IWTLPSSILA LAGVKAPICM KFLSMASNNK VDAFLNPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)