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AT2G39518.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39530.1); Has 160 Blast hits to 160 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGS9eggNOG:ENOG4111CY7EMBL:AC004218EMBL:AK221802
EMBL:CP002685EnsemblPlants:AT2G39518EnsemblPlants:AT2G39518.1entrez:5007945
GeneID:5007945GO:GO:0005886GO:GO:0016021Gramene:AT2G39518.1
hmmpanther:PTHR11615hmmpanther:PTHR11615:SF148HOGENOM:HOG000090983InParanoid:Q56X75
InterPro:IPR006702KEGG:ath:AT2G39518OMA:FFTISEFPaxDb:Q56X75
Pfam:PF04535Pfam:Q56X75PhylomeDB:Q56X75PRIDE:Q56X75
PRO:PR:Q56X75ProteinModelPortal:Q56X75Proteomes:UP000006548RefSeq:NP_001078023.1
TAIR:AT2G39518TMHMM:TMhelixUniGene:At.50750UniProt:Q56X75
Coordinates (TAIR10) chr2:-:16496029..16496937
Molecular Weight (calculated) 18801.30 Da
IEP (calculated) 9.53
GRAVY (calculated) 0.84
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPPPSPPA VSLKVLLLLL RVLTGVFLVI ALIILSTNSV TIVSQGSALK FHFKDVYAYR YMLSAAVIGL VYAVIQLFFT ISEFATGVKN PFNYQLDFYG
101: DKLISYLVAT GSAAGFGVTK DLKDTFLALV ALDSTDPVDK FFSKGYASAS LLLFAFICLA VLSVFSSFAM AKRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)