AT2G39518.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Uncharacterised protein family (UPF0497) | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39530.1); Has 160 Blast hits to 160 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:16496029..16496937 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 18801.30 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.84 | ||||||||||||||||||||||||||||||||
Length | 174 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAPPPPSPPA VSLKVLLLLL RVLTGVFLVI ALIILSTNSV TIVSQGSALK FHFKDVYAYR YMLSAAVIGL VYAVIQLFFT ISEFATGVKN PFNYQLDFYG 101: DKLISYLVAT GSAAGFGVTK DLKDTFLALV ALDSTDPVDK FFSKGYASAS LLLFAFICLA VLSVFSSFAM AKRN |
||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)