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AT1G63900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23118188 (2012): plastid plastid envelope plastid outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : E3 Ubiquitin ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
E3 Ubiquitin ligase family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), E3 Ubiquitin ligase (InterPro:IPR022170); BEST Arabidopsis thaliana protein match is: E3 Ubiquitin ligase family protein (TAIR:AT1G59560.1); Has 3444 Blast hits to 3338 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 1891; Fungi - 50; Plants - 799; Viruses - 222; Other Eukaryotes - 472 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-811-MONOMERBioCyc:ARA:GQT-813-MONOMEReggNOG:ENOG410YF4MeggNOG:KOG1571
EMBL:AK176213EMBL:AK176755EMBL:AY128352EMBL:BT000008
EMBL:CP002684EnsemblPlants:AT1G63900EnsemblPlants:AT1G63900.1entrez:842693
Gene3D:3.30.40.10GeneID:842693GO:GO:0004842GO:GO:0007005
GO:GO:0008270GO:GO:0016874Gramene:AT1G63900.1hmmpanther:PTHR12183
hmmpanther:PTHR12183:SF18HOGENOM:HOG000006093InterPro:IPR001841InterPro:IPR013083
InterPro:IPR022170KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
ncoils:CoilPfam:PF12483Pfam:PF13920Pfscan:PS50089
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_176574.2STRING:3702.AT1G63900.2
SUPFAM:SSF57850TAIR:AT1G63900tair10-symbols:DAL1UniGene:At.22411
UniGene:At.74868unipathway:UPA00143UniProt:Q8L7N4
Coordinates (TAIR10) chr1:+:23717056..23719086
Molecular Weight (calculated) 37910.00 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.08
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)