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AT1G63010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26554016 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:16618929 (2006): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein; INVOLVED IN: transmembrane transport; LOCATED IN: vacuolar membrane, plant-type vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT4G22990.2); Has 2617 Blast hits to 2616 proteins in 868 species: Archae - 45; Bacteria - 1644; Metazoa - 146; Fungi - 352; Plants - 233; Viruses - 1; Other Eukaryotes - 196 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101S9eggNOG:KOG1161eggNOG:KOG2325EMBL:CP002684
EnsemblPlants:AT1G63010EnsemblPlants:AT1G63010.1EnsemblPlants:AT1G63010.3EnsemblPlants:AT1G63010.4
entrez:842604ExpressionAtlas:F4I0G4GeneID:842604GO:GO:0016021
GO:GO:0055085Gramene:AT1G63010.1Gramene:AT1G63010.3Gramene:AT1G63010.4
hmmpanther:PTHR23510hmmpanther:PTHR23510:SF21InterPro:IPR004331InterPro:IPR011701
InterPro:IPR020846KEGG:ath:AT1G63010Pfam:PF03105Pfam:PF07690
Pfscan:PS51382PROSITE:PS51382Proteomes:UP000006548RefSeq:NP_001077762.1
RefSeq:NP_001077763.1RefSeq:NP_564807.2SMR:F4I0G4STRING:3702.AT1G63010.5
SUPFAM:SSF103473TAIR:AT1G63010TMHMM:TMhelixUniGene:At.17751
UniProt:F4I0G4
Coordinates (TAIR10) chr1:-:23347972..23351026
Molecular Weight (calculated) 78227.90 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.19
Length 699 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAFGKYLQR KQIEEWSGYY INYKLMKKKV KQYAEQIQGG SQHPRHVLKD FSRMLDTQIE TTVLFMLEQQ GLLSGRLAKL RESHDAILEQ PDISRIFELR
101: EAYRDVGRDL LQLLKFVELN AIGLRKILKK FDKRFGYRFA DYYVKTRANH PYSQLQQVFK HVGVGAVVGA ISRNLHELQE NEGSFYSIYD QPVLPAQDPV
201: VEAINNAVDK LTFSTNFLNF LAQHALIMQD DLVTPSEDTI DERSYHFNSL LLNLGNTFLY MVNTYIIVPT ADDYSMSLGA AATVCGVVIG SMAVAQVFSS
301: VYFSAWSNKS YFKPLVFSSI ALFIGNLMYA LAYDANSIAL LLLGRVCCGL GSARAVNRRY ISDCVPLRIR MQASAGFVSA SALGMACGPA LAGLLQIKFK
401: FYKFTFNQST LPGWVMAVAW LFYLVWLCIS FREPLRDTED GEKNNRNETT SATDRVESSR VEEGLRLPLL ITSGIKPEDE EECDESEESP EDSHKPANSF
501: IEAYRLLTPS VKVQLLIYFM LKYSMEILLS ESSVITSYYF SWTTSSVAIF LACLGLTVLP INILVGSYIS NMFEDRQILL TSEIIVFLGI LFSFNLFVPY
601: TVPQYVISGL IMFVAAEVLE GVNLSLLSRV MSSRLSKGTY NGGLLSTEAG TLARVVADAT ITLGGYLGRG HLLNATLLPS LVICIGSIVA TCCTYNSLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)