AT1G52080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : actin binding protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
unknown function | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AR791; FUNCTIONS IN: actin binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.2); Has 24282 Blast hits to 16377 proteins in 1084 species: Archae - 431; Bacteria - 1887; Metazoa - 12444; Fungi - 1813; Plants - 1044; Viruses - 150; Other Eukaryotes - 6513 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19369788..19371862 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66295.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIITTHKRDI NLLVLQLGAA LAVSFAGFLF ARFRKNTKRI GPTLPPLPPH SSDNGYRDYS NKSIDRRDEG TEKTDEETLI GVSPRRECDL DEKDVFLLPE 101: FEEEAKKLDL LVCDDCETPR SDITAPLAFP SEEEADHENE INRLRNTVRA LRERERCLED KLLEYYSLKE QQKIAMELRS RLKLNQMETK VFNFKIKKLQ 201: AENEKLKAEC FEHSKVLLEL DMAKSQVQVL KKKLNINTQQ HVAQILSLKQ RVARLQEEEI KAVLPDLEAD KMMQRLRDLE SEINELTDTN TRLQFENFEL 301: SEKLESVQII ANSKLEEPEE IETLREDCNR LRSENEELKK DVEQLQGDRC TDLEQLVYLR WINACLRYEL RTYQPPAGKT VARDLSTTLS PTSEEKAKQL 401: ILEYAHSEDN TDYDRWSSSQ EESSMITDSM FLDDSSVDTL FATKTKKTGK KKLMHKLMKI LHGKDTKDSK KRAGSSEPSS SNTGVHSTPR QLRSTHSMDF 501: QMLMRGKDEE EDFKNHIVML RRKSEAAGSS TYGEEHCLET DQNGKKELIK LADALTKSRS TKKLHKKSVS FFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)