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AT1G51520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G21100.2); Has 257 Blast hits to 190 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 251; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EMBL:AC024261EMBL:AY091129EMBL:AY114000EMBL:CP002684
EnsemblPlants:AT1G51520EnsemblPlants:AT1G51520.1entrez:841577ExpressionAtlas:Q9C8K4
Gene3D:3.30.70.330GeneID:841577GO:GO:0000166GO:GO:0003676
Gramene:AT1G51520.1hmmpanther:PTHR24009hmmpanther:PTHR24009:SF3HOGENOM:HOG000242520
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G51520Pfam:PF00076
Pfscan:PS50102PhylomeDB:Q9C8K4PIR:F96553PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_175563.1SMART:SM00360SUPFAM:SSF54928
TAIR:AT1G51520UniGene:At.37800UniProt:Q9C8K4
Coordinates (TAIR10) chr1:+:19106789..19108533
Molecular Weight (calculated) 46873.80 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.67
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPGDPTSII FSKIRTFELE NASRVIDYFL LQDMEQRDLI RIAFGPDSLI QTFCQKAKVD LGFSSNGFSR PINIHGQSLS SSSPRNGFLE FSRNPSNPLS
101: SSLTLNTLRD NKPNFNSSPF RESSSLFASS SGDEQQQQQF SNNFLFTNDE DPFANSHKRS FSANDACFES EEPWFGGGNG CHQFPQGGLV DGFGSSGVFG
201: SPSEMDYMLE GMMRMKLAQQ KSMVAAQFMA ACGSPMLHRH GSGHFGEECG NYFSQGRHER EDSVSKQIYL TFPSESSFTD EDVSTYFRDF GLVDDVRIPY
301: QQQRMYGFVT FAKAETVRTI LARGNPHFIC DSRVLVKPYK EKGKILQKRQ QQQLHELLER GNYSPSSSPS GKDSRELYEC RLGPRMFSKK TQEMLRRKTE
401: QADLQHAIEV ELQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)