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AT1G27410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.643
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA repair metallo-beta-lactamase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 810 Blast hits to 798 proteins in 218 species: Archae - 6; Bacteria - 54; Metazoa - 272; Fungi - 214; Plants - 166; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1236eggNOG:KOG1361EMBL:AC004557EMBL:AY065116
EMBL:AY081629EMBL:CP002684EnsemblPlants:AT1G27410EnsemblPlants:AT1G27410.1
entrez:839631Gene3D:3.60.15.10GeneID:839631Gramene:AT1G27410.1
hmmpanther:PTHR23240hmmpanther:PTHR23240:SF9HOGENOM:HOG000082912InterPro:IPR001279
InterPro:IPR011084KEGG:ath:AT1G27410KO:K15341OMA:DIFTTKT
Pfam:PF07522Pfam:PF12706PhylomeDB:Q9FZJ4PIR:E86399
Proteomes:UP000006548RefSeq:NP_174061.1SMR:Q9FZJ4STRING:3702.AT1G27410.1
SUPFAM:SSF56281TAIR:AT1G27410UniGene:At.28586UniProt:Q9FZJ4
Coordinates (TAIR10) chr1:+:9517226..9518743
Molecular Weight (calculated) 47765.50 Da
IEP (calculated) 9.11
GRAVY (calculated) -0.15
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGLISVDR WRNGSQAYFL THIHSDHTRG LSGGWSQGPL YCSRTTASLF PSRFPGFDLS LLRVVPLFSW TSLSLRSPSS GSTVRLHLMA IDAHHCPGSI
101: MFLFRGDFGC FLYTGDFRWD SDASDEARTT LVAAIDEFPV DILYLDNTYC NPIYSFPSRL VAVQLVADII ASHPSHDIII AVDSLGKEDL LVHVSRILNI
201: KIWVWPERLR TMHLLGFQDI FTTDTSLTRV RAVPRYSFSI QTLEGLNTMC PTIGIMPSGL PWVKRPFKGD DKLSGSFLTA SMKNETVSAK KELEAAAVHK
301: FHDYMYSVHY SDHSCYEEIG EFIKLVKPKS MKGIVVSSSS YVDPLYYFGR ICGANQPPQV LLMRPDIAEE FRAVRIKSYS ASDKTRMLAK EKRWKRDSHS
401: SLKRNKKRAR IQVKCAKILE VD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)