AT1G27420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.489 vacuole 0.175 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G67480.2); Has 8547 Blast hits to 5216 proteins in 315 species: Archae - 27; Bacteria - 542; Metazoa - 6188; Fungi - 6; Plants - 1209; Viruses - 272; Other Eukaryotes - 303 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9519108..9520520 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38944.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR 101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC 201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN 301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)