AT5G64630.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25833724..25836158 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47948.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVLSIPFVF LHLVCIRELL ASGADGGELF IWKLHPSETN QSWKVHKSLS FHRKDVLDLQ WSPDDAYLIS GSVDNSCIIW DVNKGSVHQI LDAHCHYVQG 101: VAWDPLAKYV ASLSSDRTCR IYANKPQTKS KGVEKMNYVC QHVIMKADQQ RGDETKTIKT HLFHDETLPS FFRRLSWSPD GSFLLIPAGS FKVSPTSEAV 201: NATYVFSRKD LSRPALQLPG ASKPVVVVRF CPVAFKLRGS SSEEGFFKLP YRLVFAIATL NSVYIYDTEC VAPIAVLAGL HYAAITDITW SPNASYLALS 301: SQDGYCTLVE FEDKELGEAV SISVGKKPVD GEEKKHDLEK GDELMTETTP DESKKQAELE QNEESKQPLP SKITTDGKEK EHIMQKTDDE VMTETRHEEE 401: NQPLQSKVNT PVSNKPARKR ITPMAIDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)