AT5G60170.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24228178..24232394 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108258.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 987 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDHGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI VDMAEKDQIE GRCPACRTPY DKEKIVGMTV NCDSLASEGN MERKKIQKSK SKSSEGRKQQ 101: LTSVRVIQRN LVYIVGLPLN LADEDLLQHK EYFGQYGKVL KVSMSRTASG VIQQFPNNTC SVYITYGKEE EAVRCIQAVH GFILDGKPLK ACFGTTKYCH 201: AWLRNVACVN PDCLYLHEVG SQDDSFTKDE IISAYTRSRV QQITGATNIL QHHSGNMLPP PLDAYCSDSS SAKPIIKVPS TNATSVPRYS PPSGSGSSSR 301: STALPAAASW GTHQSLATSV TSNGSSDIQR STSVNGTLPF SAVVANAAHG PVSSNDILKR PSRKEESQIV MDKVKPSVLK PLQHNVVVSG SERITAPDRD 401: PTSNRLSSSV DSAYGGRDID QPSAYSGRDI DKPSSTVSSF DAANEAVEDV PTVSNLLDGV ACMRITMNCR DERPDITMAI GSQSDQGSIR QPGSEVSKLP 501: DLEQCRIDSS INTDKKAISL EDRIPRTRPG WDWISDLQSQ MQGSSKLQVE DISTLDSQRP HPEEDIIHSR LLSNLSSSSL DTNHMASRSS LPCEVRGSDR 601: LHLPNGFGEK SMSSVEHSLF ANEGRNKVNN AEDAILSNIL SLDFDPWDES LTSPHNLAEL LGEVDQRSST LKPSNFLKQH NNQSRFSFAR YEESSNQAYD 701: SENYSIYGQL SRDKPIQESA MSRDIYRNNL GSVNGFASNF AGGLDNFAAS PLFSSHKNPV SRPQVSAPPG FSAPNRLPPP GFSSHERVGL SSDTTLGNRF 801: LDSTSLRNAY QVPPPVGNSN GASDIDFVDP AILAVGRGMV NADLDMRSGF SSQLNSFENE TGLHMLRQQS LSSAQQVNGF HHDLRNLSPS LNDPYGFSSR 901: LMDQTQGSSL SPFSQLPRQQ PSANSILSNG HHWDKWNEGQ SVNNIGMAEL LRNERLGFNG SLYNNGYEEP KFRIPSPGDV YNRTYGI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)