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AT4G03270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclin D6;1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclin D6;1 (CYCD6;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D4;1 (TAIR:AT5G65420.1); Has 2035 Blast hits to 2034 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 1002; Fungi - 29; Plants - 874; Viruses - 2; Other Eukaryotes - 128 (source: NCBI BLink).
Protein Annotations
BioGrid:13291eggNOG:ENOG410XRKCeggNOG:KOG0656EMBL:AC005275EMBL:AL161496EMBL:CP002687EnsemblPlants:AT4G03270
EnsemblPlants:AT4G03270.1entrez:828000Gene3D:1.10.472.10GeneID:828000Genevisible:Q9ZR04GO:GO:0005634GO:GO:0007049
GO:GO:0051301GO:GO:0051726Gramene:AT4G03270.1hmmpanther:PTHR10177hmmpanther:PTHR10177:SF188HOGENOM:HOG000242458InParanoid:Q9ZR04
IntAct:Q9ZR04InterPro:IPR004367InterPro:IPR006671InterPro:IPR013763InterPro:IPR031093KEGG:ath:AT4G03270KO:K18812
OMA:MIERMENPANTHER:PTHR10177:SF188PaxDb:Q9ZR04Pfam:PF00134Pfam:PF02984Pfam:Q9ZR04PhylomeDB:Q9ZR04
PIR:E85041PRO:PR:Q9ZR04ProteinModelPortal:Q9ZR04Proteomes:UP000006548RefSeq:NP_192236.1SMART:SM00385SMART:SM01332
SMR:Q9ZR04STRING:3702.AT4G03270.1SUPFAM:SSF47954TAIR:AT4G03270tair10-symbols:CYCD6;1UniGene:At.54112UniProt:Q9ZR04
Coordinates (TAIR10) chr4:-:1432375..1433691
Molecular Weight (calculated) 34670.20 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.25
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)