AT4G28430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
| FP Images |
7-day old Arabidopsis seedling (no marker)
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Reticulon family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:14057846..14059772 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51425.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSTTTPPSL RSNTRSALRL ARNNKTLVKS HIPSLDLVLL SPKNNNGTPY PSPVSLSSPS SPVTLREILL LSPSPLRKSR TRLSNRFDME AAEAAVTARR 101: SKTKGGQNGL LASPSPRNFR RSRLRSEAMV DTKENTEPIV VVTDEKKQNQ RKQKKLGRSK KEKHSSVPLL ASPSPSSDQP QDVCQGDLER IRENISDLIM 201: WRDVAKSTLW FGFGCICFLS TCFAAKGFNF SVFSAISYLG LLFLGVSFLS NTLRQRVTEE ARRELKLSED DVLRIARRML PITNLAISKT SELFSGEPAM 301: TLKVAPFVLM GAEYGYLITL WRLCAFGFFL SFTIPKLYSC YASQLNQKVE CAQRRFVEAW GVCTHKKFVA GSAVTAFWNL TSLKTRFIAV FIIVVVIRYR 401: RQNLQLDSED EEEKKQQEKT HPEQQKSPED KSTSPRSAEE EQALVLVAET KAPKKLY |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)