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AT3G01710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKZ4eggNOG:ENOG410YSYIEMBL:CP002686EnsemblPlants:AT3G01710
EnsemblPlants:AT3G01710.1entrez:821092ExpressionAtlas:F4J761GeneID:821092
Gramene:AT3G01710.1hmmpanther:PTHR31358hmmpanther:PTHR31358:SF12InParanoid:F4J761
InterPro:IPR027329ncoils:CoilOMA:TPAKEFNPaxDb:F4J761
Pfam:PF06886PRIDE:F4J761ProteinModelPortal:F4J761Proteomes:UP000006548
RefSeq:NP_566147.3TAIR:AT3G01710UniGene:At.47816UniProt:F4J761
Coordinates (TAIR10) chr3:-:259952..261738
Molecular Weight (calculated) 43911.90 Da
IEP (calculated) 10.31
GRAVY (calculated) -1.05
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MGESACLMQP FSYAAPQGDS LGALGQSVSF GRFMSEKLDW EKWSAFSTQN PYVAEAERYS KPGSVAQKKA FFEAHYKKVA AARKAAAEEA LLLQQQIPKP
101: QPEKSPVQEE DINEGEKKDW MVSKPDLEIP RGSLDVSAQL KLLAEKEGRF SNRQSDEKEN CGMAESEING RTAEEQVDEE KPILKSVKKK SKDSQPKSST
201: KPRVSKYNSS ERTPSKKSNN KSSSYTFTPA KEFNRLVSII RKIDGSRASS KPTKDCKTPL RTPSNKVSAK GMVEDSLSTP LSSNTSKCRG KIAPNSSAKT
301: GRGRWNFLPA ETPSCFTPFG LRTEERAERR KKKLEGKFKE METQNQKAEE RSVEKEESKL RQRLCFKAKP LPNFYKQRPK STDQTKKALL Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)