AT4G21820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding;calmodulin binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11577558..11583871 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 142821.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1255 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDENEPPCAS PAPPRNPASS LLSDISNFKT PRRTSVVNSN ISKSPYPHFF TASKQTPKSS SSNFRRPSMV HSYASRSKVS TSSRRLKAFE LQQSQSSRKA 0101: ELTKEKNLRS LAKSLTVWLN FLFENPENCG CDPFENESGV GNLGKGKRDS GEALGNSKSV GVDTMWRSPK RLRNLGWCGE KKRSEIDSSL TGSKYSTLRE 0201: SLRDVCSLDD LKQRMQFHLS LGSCKEIFDV MTRVSKNIDE GRIKMKPQCP LVTDFGMKEK AIKALMSYNQ VWLRLGLYII FGGDSFLSDS EVNSDQEMAF 0301: LKMVISKQFF SHDGLARSYV YNKMVEGLYR PGYYEALGNV ILKRILLLVL VIDRAKSQSC LSLKYGIDGI DGGSPLMFSE KSSIKSSHQL ICELLSSDVM 0401: HGEGNLLAHL VIIGYKIPYQ QSPLVEYNFR VRELFADLQD GVRLCRAIQL LLHDPSILTK MVVPSDNRKK NLANCRIALQ YLKDAGVSLK DDEGMMITGE 0501: DVADGDRELT ISLLWNIFVH LQLPLLINGR LLTEEIYKVQ GVEQNNQITM STPLEMLLNW IQDPGGQEGP QSVMSNTDYH DAVQNFILSQ KLTALLGSFP 0601: EIGDLLEHNA VVSNQSVIIL LAFLSSKLIV KENLLDFTLA GYLTNSVFSQ EQLNFHKLLC SSCQVQEKRY SRIRISCSSS EAVTIEEPDR ENGEDATKRF 0701: QAIKAWWQDM ANQNQISVGK ANSHTLQGSL SRKCTTDSQR AYLLLAEIAA VIIQSNIRGL HARRKFRNKM RAICFLQAAV RTWLSVKNIQ VVEKFNVEEV 0801: TLHLSERSAN LKPVARYVKF IVDRSRFIKL RKSVSVIQKA VRRHQSNLHH ELKAALRIQL AWRSYKEKVI SSITIQSYVR GWITRRMNRT YKFSSILIQR 0901: YCRGWLARRK FCLQREATIS IQSAIRKFNC MMSFHRCKHA ATQVQRLVRG QIVRSRLQGA STLYSKLDEG VSRLPQHSFG MTKMLHSVIK VQRWWREFLH 1001: SKNMRIKSAV LIQSHIRGLF ARRKTSVERH NIVMIQSHWR GYLTRKASKA QVLDLRVRMQ TSAANIDDKK RLINKLLSAL SELLSMKNVH NILHICETLE 1101: SATKYSDKCC EELVAAGAIE KLLTLIRSAS RSIPDQQVSK HALSTLGHLA RYPQMADELI NTKGSIQTIF WELLRNKEEA YFIASDVLKK ICSSHKGVEA 1201: VRKLPALVKR LHVLVEELTR KANIEKRNVK GQTGKEKSER RLKEAIELVK LITRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)