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AT3G55840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.615
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Hs1pro-1 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hs1pro-1 protein; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: ortholog of sugar beet HS1 PRO-1 2 (TAIR:AT2G40000.1); Has 60 Blast hits to 60 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10066eggNOG:ENOG410IFFHeggNOG:ENOG410YA6BEMBL:AL163832EMBL:AY034950EMBL:AY070026EMBL:AY085394
EMBL:CP002686EMBL:DQ132634EnsemblPlants:AT3G55840EnsemblPlants:AT3G55840.1entrez:824750GeneID:824750Genevisible:Q9LY61
GO:GO:0005737GO:GO:0006952Gramene:AT3G55840.1hmmpanther:PTHR34795HOGENOM:HOG000238481InParanoid:Q9LY61IntAct:Q9LY61
InterPro:IPR009743InterPro:IPR009869KEGG:ath:AT3G55840OMA:ENEMRWCPaxDb:Q9LY61Pfam:PF07014Pfam:PF07231
Pfam:Q9LY61PhylomeDB:Q9LY61PIR:T49196PRO:PR:Q9LY61ProteinModelPortal:Q9LY61Proteomes:UP000006548RefSeq:NP_191143.1
STRING:3702.AT3G55840.1SUPFAM:SSF140959TAIR:AT3G55840UniGene:At.19788UniGene:At.70251UniProt:Q9LY61
Coordinates (TAIR10) chr3:-:20717530..20718816
Molecular Weight (calculated) 48790.50 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.26
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MADLDLQRKM VSPKLHVTIP EPCKLSSVSS PISSSSSAAC SAYELYLRLP ELRNLWSSLY FPHWISEPVL KPALQALEIT FRLILTVASD TRPYINRREW
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)